Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a06
         (626 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051550-1|AAK92974.1|  213|Drosophila melanogaster GH19763p pro...    82   5e-16
AE014297-988|AAF54414.1|  213|Drosophila melanogaster CG9427-PA ...    82   5e-16
AY061519-1|AAL29067.1|  250|Drosophila melanogaster LD47508p pro...    81   2e-15
AE014297-1684|AAF54945.2|  250|Drosophila melanogaster CG9796-PA...    81   2e-15
AY071032-1|AAL48654.1|  216|Drosophila melanogaster RE11385p pro...    51   1e-06
AE014297-3349|AAF56156.1|  216|Drosophila melanogaster CG13822-P...    51   1e-06
AY095188-1|AAM12281.1|  207|Drosophila melanogaster LD22034p pro...    49   5e-06
AE014297-3350|AAF56157.1|  207|Drosophila melanogaster CG10157-P...    49   5e-06
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase...    28   9.0  
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase...    28   9.0  
AY070529-1|AAL48000.1|  746|Drosophila melanogaster GM13460p pro...    28   9.0  
AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulf...    28   9.0  
AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA...    28   9.0  
AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA...    28   9.0  
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera...    28   9.0  

>AY051550-1|AAK92974.1|  213|Drosophila melanogaster GH19763p
           protein.
          Length = 213

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGGDGFECQHGP 566
           K+ +++ YES C DS++F + QL P   +  DYID+ L+PFGK+ S  NG   F CQHGP
Sbjct: 34  KLHITLLYESLCPDSRNF-MHQLGPVYEEFGDYIDILLVPFGKSQSERNGAI-FHCQHGP 91

Query: 567 PECFGNLIQDCTLN 608
            EC GN +Q C +N
Sbjct: 92  AECKGNRLQSCVIN 105


>AE014297-988|AAF54414.1|  213|Drosophila melanogaster CG9427-PA
           protein.
          Length = 213

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGGDGFECQHGP 566
           K+ +++ YES C DS++F + QL P   +  DYID+ L+PFGK+ S  NG   F CQHGP
Sbjct: 34  KLHITLLYESLCPDSRNF-MHQLGPVYEEFGDYIDILLVPFGKSQSERNGAI-FHCQHGP 91

Query: 567 PECFGNLIQDCTLN 608
            EC GN +Q C +N
Sbjct: 92  AECKGNRLQSCVIN 105


>AY061519-1|AAL29067.1|  250|Drosophila melanogaster LD47508p
           protein.
          Length = 250

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIH-KLEDYIDLQLIPFGKASSINNGGD-GFECQH 560
           KV +S++YES C DS  FI EQ++P +  +L D ++L  +PFGK+  +  G +  F C H
Sbjct: 24  KVPISIYYESLCPDSAKFITEQVYPAVKGELRDVVELTFVPFGKSQFVTQGSEVTFTCHH 83

Query: 561 GPPECFGNLIQDCTLNEMKSYS 626
           GP EC+GN +  C +  +++ S
Sbjct: 84  GPNECYGNKVHACAIEHIQANS 105


>AE014297-1684|AAF54945.2|  250|Drosophila melanogaster CG9796-PA
           protein.
          Length = 250

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIH-KLEDYIDLQLIPFGKASSINNGGD-GFECQH 560
           KV +S++YES C DS  FI EQ++P +  +L D ++L  +PFGK+  +  G +  F C H
Sbjct: 24  KVPISIYYESLCPDSAKFITEQVYPAVKGELRDVVELTFVPFGKSQFVTQGSEVTFTCHH 83

Query: 561 GPPECFGNLIQDCTLNEMKSYS 626
           GP EC+GN +  C +  +++ S
Sbjct: 84  GPNECYGNKVHACAIEHIQANS 105


>AY071032-1|AAL48654.1|  216|Drosophila melanogaster RE11385p
           protein.
          Length = 216

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFE--- 551
           ++ +++ YE+ C DS  FI  +L+  +   +     DL+L PFGKA   NN   G     
Sbjct: 30  RLLVAIHYEALCPDSMSFIRRRLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVF 89

Query: 552 CQHGPPECFGNLIQDCTLNEM 614
           CQHG  EC  N +  C +  +
Sbjct: 90  CQHGVDECELNALHACIIETL 110


>AE014297-3349|AAF56156.1|  216|Drosophila melanogaster CG13822-PA
           protein.
          Length = 216

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFE--- 551
           ++ +++ YE+ C DS  FI  +L+  +   +     DL+L PFGKA   NN   G     
Sbjct: 30  RLLVAIHYEALCPDSMSFIRRRLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVF 89

Query: 552 CQHGPPECFGNLIQDCTLNEM 614
           CQHG  EC  N +  C +  +
Sbjct: 90  CQHGVDECELNALHACIIETL 110


>AY095188-1|AAM12281.1|  207|Drosophila melanogaster LD22034p
           protein.
          Length = 207

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQH 560
           ++ ++++YE+ C     F+  QL+P++ + +   + DL L+P+G A + ++G    ECQH
Sbjct: 29  RLAITLYYEALCPYCMEFVTTQLNPSMVRQDRLPFTDLTLVPYGNARTNDDG--NVECQH 86

Query: 561 GPPECFGNLIQDCTL 605
           G  EC  N    C L
Sbjct: 87  GVMECELNAWHACIL 101


>AE014297-3350|AAF56157.1|  207|Drosophila melanogaster CG10157-PA
           protein.
          Length = 207

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +3

Query: 387 KVQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQH 560
           ++ ++++YE+ C     F+  QL+P++ + +   + DL L+P+G A + ++G    ECQH
Sbjct: 29  RLAITLYYEALCPYCMEFVTTQLNPSMVRQDRLPFTDLTLVPYGNARTNDDG--NVECQH 86

Query: 561 GPPECFGNLIQDCTL 605
           G  EC  N    C L
Sbjct: 87  GVMECELNAWHACIL 101


>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
            polymerase-primase 180 kdasubunit protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 207  ESLLKTVLNYFKIYKKNSFNVVSCFTETIL 118
            ESLLKT L  +++ +   F  V+C TE ++
Sbjct: 1278 ESLLKTTLQLYRLCEPFRFQCVTCKTEQLM 1307


>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
            alpha protein.
          Length = 1505

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 207  ESLLKTVLNYFKIYKKNSFNVVSCFTETIL 118
            ESLLKT L  +++ +   F  V+C TE ++
Sbjct: 1275 ESLLKTTLQLYRLCEPFRFQCVTCKTEQLM 1304


>AY070529-1|AAL48000.1|  746|Drosophila melanogaster GM13460p
           protein.
          Length = 746

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 207 ESLLKTVLNYFKIYKKNSFNVVSCFTETIL 118
           ESLLKT L  +++ +   F  V+C TE ++
Sbjct: 534 ESLLKTTLQLYRLCEPFRFQCVTCKTEQLM 563


>AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulfate
           N-deacetylase/N-sulfotransferase homolog protein.
          Length = 1048

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 488 RLAAHTFWEGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIF 625
           RLA +TF   I++ Q W  +++++     L E   RLH E  + ++
Sbjct: 691 RLALYTFQSVIKFLQCWTNLKLASAPPVQLAEMYFRLHPEEVDPVW 736


>AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA
            protein.
          Length = 1488

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 207  ESLLKTVLNYFKIYKKNSFNVVSCFTETIL 118
            ESLLKT L  +++ +   F  V+C TE ++
Sbjct: 1276 ESLLKTTLQLYRLCEPFRFQCVTCKTEQLM 1305


>AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA
           protein.
          Length = 1048

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 488 RLAAHTFWEGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIF 625
           RLA +TF   I++ Q W  +++++     L E   RLH E  + ++
Sbjct: 691 RLALYTFQSVIKFLQCWTNLKLASAPPVQLAEMYFRLHPEEVDPVW 736


>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
            alpha 180K subunit protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 207  ESLLKTVLNYFKIYKKNSFNVVSCFTETIL 118
            ESLLKT L  +++ +   F  V+C TE ++
Sbjct: 1275 ESLLKTTLQLYRLCEPFRFQCVTCKTEQLM 1304


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,191,374
Number of Sequences: 53049
Number of extensions: 584252
Number of successful extensions: 1238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)