Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a06
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical pr... 65 3e-11
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 56 2e-08
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 56 3e-08
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical p... 50 1e-06
Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical... 32 0.39
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 31 0.51
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 29 2.7
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 2.7
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 29 3.6
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 28 4.8
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 28 4.8
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 28 4.8
Z93380-6|CAB07602.2| 339|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81587-13|CAB04710.2| 339|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 27 8.3
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 27 8.3
Z70270-11|CAJ80821.1| 606|Caenorhabditis elegans Hypothetical p... 27 8.3
Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical p... 27 8.3
Z68215-18|CAJ80818.1| 606|Caenorhabditis elegans Hypothetical p... 27 8.3
Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical p... 27 8.3
AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical... 27 8.3
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 27 8.3
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 27 8.3
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 27 8.3
>Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical
protein F37H8.5 protein.
Length = 277
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 384 RKVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQH 560
+K+ ++V E+ C D ++F+ +QL+P + K +Y++++L+PFG A + +G +CQH
Sbjct: 74 QKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDG--TIKCQH 131
Query: 561 GPPECFGNLIQDCTLNEMKSYS 626
G EC N + C ++ M+ S
Sbjct: 132 GEEECSINKFEGCFIDSMQDQS 153
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +3
Query: 363 CIGVDLKRK-VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGG 539
C G+ +R+ +++++ YE+ C + FI QL ++ + + L+L+P+G + + +G
Sbjct: 131 CDGLRHRRQPIKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDG- 189
Query: 540 DGFECQHGPPECFGNLIQDCTLNEMK 617
F C HG EC N +Q C ++ +K
Sbjct: 190 -SFSCNHGQKECDANRLQSCVIDILK 214
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +3
Query: 390 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 557
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 79 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 137
Query: 558 HGPPECFGNLIQDCTLN 608
HGP EC N + +C ++
Sbjct: 138 HGPTECQINQLMNCVID 154
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +3
Query: 390 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 557
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 197
Query: 558 HGPPECFGNLIQDCTLN 608
HGP EC N + +C ++
Sbjct: 198 HGPTECQINQLMNCVID 214
>Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical
protein R07E5.4 protein.
Length = 186
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +3
Query: 345 VILAVFCIGVDLK-RKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKAS 521
V+L F V L+ ++V +++F ES C + EQ+ P ++LQ++PFGK
Sbjct: 3 VLLVAFLFPVLLQAQQVNVTIFTESQCPYCTKLLREQIWPFYVNRPGIMNLQIVPFGKGD 62
Query: 522 SINNGGDGFE--CQHGPPECFGNLIQDCTLN 608
+ F C HG EC N +Q+C ++
Sbjct: 63 CTYDYNRNFHCTCMHGATECDLNRLQNCAIS 93
>Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical
protein ZK669.2 protein.
Length = 264
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 390 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFEC--Q 557
+ + F ES C D+ + + P L+ I++ PFG AS + G C Q
Sbjct: 74 INIEFFGESLCPDTTRYFRNHIMPVWTSLQASSTINITYHPFGLASCRRSAETGIRCNCQ 133
Query: 558 HGPPECFGNLIQDCTLNEMK 617
HGP EC N++Q C ++ ++
Sbjct: 134 HGPAECQLNMLQACVISTLQ 153
>AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical
protein Y23H5B.1 protein.
Length = 369
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 381 KRKVQLSVFYESACSDSKHFILEQLHPT---IHKLEDYIDLQLIPFGKASSINNG 536
K + +LS+ Y+ + + LEQLHPT I KL ++++ +P + + N G
Sbjct: 52 KNRERLSLLYKCQEATDCYMKLEQLHPTSKEIKKLVNFVERNQVPICQILNFNTG 106
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 457 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 359
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 457 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 359
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 457 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 359
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 457 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 359
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical
protein ZK669.3 protein.
Length = 218
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +3
Query: 390 VQLSVFYESACSDSKHFILEQLHPTIHKLEDY--IDLQLIPFG-KASSINN-GGDGF--E 551
V + F E CSD+ +++ P L I+ P+G K + +++ D +
Sbjct: 31 VNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINFDYHPYGIKTTCVDSESADDVVCD 90
Query: 552 CQHGPPECFGNLIQDCTLNEMKSY 623
C HG EC N +Q C + + ++
Sbjct: 91 CHHGNRECLLNQLQACVIEALPNF 114
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +3
Query: 396 LSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQL-IPFGKASSINNGGDGF---ECQHG 563
+ VF S C D+ FI QL P + + L + F + + DG C HG
Sbjct: 39 VEVFGISRCPDTSKFIHNQLVPFYQNYKGNLSDGLKLDFHAVPTGGHQVDGKYVNRCLHG 98
Query: 564 PPECFGNLIQDCTLNEMK 617
EC N +Q C+ +K
Sbjct: 99 ALECALNKLQMCSKKHIK 116
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 345 VILAVFCIGVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASS 524
+I A IG+ L+ + L+++ + SK L L + K+E+ ID L ASS
Sbjct: 1169 IIAASSMIGIRLQILLALTIWLAETGAASKRKNLRSLFMNLTKMENQIDPFLSILNLASS 1228
Query: 525 IN 530
IN
Sbjct: 1229 IN 1230
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 380 QVNSYTENGQNHVNIYKKLHI 318
Q+ SY +NG HV +Y+ H+
Sbjct: 643 QIQSYMQNGARHVRVYQFTHV 663
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -3
Query: 447 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 274
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 106 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 159
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -3
Query: 447 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 274
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 111 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 164
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 VFYESACSDSKHFILEQLHPTIHKL-EDYIDLQLIPFGKASSINNGGDGF 548
VFY+ K+ +L Q+H +H E Y + LIP SI DGF
Sbjct: 47 VFYKCKHFSKKYVVLLQIHLFLHFFGELYWTILLIPVIVIPSIGVSADGF 96
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -3
Query: 447 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 274
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 106 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 159
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -3
Query: 447 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 274
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 111 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 164
>Z93380-6|CAB07602.2| 339|Caenorhabditis elegans Hypothetical
protein F28C12.7 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 342 KYLQKTSYFLNVTTFVIRSKFNLINFYL--YMCSRV*YSTVCVR 217
K+ YF+ ++ VI+ L++FY+ Y S Y +VC++
Sbjct: 142 KFYHTHQYFIAISLLVIQLLLTLVSFYIAFYGVSLAGYVSVCIQ 185
>Z81587-13|CAB04710.2| 339|Caenorhabditis elegans Hypothetical
protein F28C12.7 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 342 KYLQKTSYFLNVTTFVIRSKFNLINFYL--YMCSRV*YSTVCVR 217
K+ YF+ ++ VI+ L++FY+ Y S Y +VC++
Sbjct: 142 KFYHTHQYFIAISLLVIQLLLTLVSFYIAFYGVSLAGYVSVCIQ 185
>Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical
protein F11C3.1 protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 201 LLKTVLNYFKIYKKNSFNVVSCFTETILQLPATMQSHCYFE 79
+L+ VLNY+ Y+K + C E I + A S FE
Sbjct: 14 ILEIVLNYYSYYRKTTMPCPHCPQEEIEAVLAVKMSQSSFE 54
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 8 CNDLYNVHTIHCDKLTCFFF*IKCSK*QWLCIVAGNCSI 124
C+ LY C CFF+ S+ ++C GNCSI
Sbjct: 43 CSHLY-YGVAACHGCKCFFWRTVKSRLNYVCRYGGNCSI 80
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 441 ILEQLHPTIHKLEDYIDLQLIPF 509
++E L+PTI+K +DL+ PF
Sbjct: 143 LIELLYPTIYKFSCLLDLRFFPF 165
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 441 ILEQLHPTIHKLEDYIDLQLIPF 509
++E L+PTI+K +DL+ PF
Sbjct: 143 LIELLYPTIYKFSCLLDLRFFPF 165
>Z70270-11|CAJ80821.1| 606|Caenorhabditis elegans Hypothetical
protein C53B4.8b protein.
Length = 606
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 467 YSRM*LLQYKVFAVRASAFIKNRKLDLSFQVN 372
YS + LQ+ VF R KNR LD+ +N
Sbjct: 284 YSNLKKLQHAVFGAREKNKFKNRMLDMVIGIN 315
>Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 467 YSRM*LLQYKVFAVRASAFIKNRKLDLSFQVN 372
YS + LQ+ VF R KNR LD+ +N
Sbjct: 284 YSNLKKLQHAVFGAREKNKFKNRMLDMVIGIN 315
>Z68215-18|CAJ80818.1| 606|Caenorhabditis elegans Hypothetical
protein C53B4.8b protein.
Length = 606
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 467 YSRM*LLQYKVFAVRASAFIKNRKLDLSFQVN 372
YS + LQ+ VF R KNR LD+ +N
Sbjct: 284 YSNLKKLQHAVFGAREKNKFKNRMLDMVIGIN 315
>Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 467 YSRM*LLQYKVFAVRASAFIKNRKLDLSFQVN 372
YS + LQ+ VF R KNR LD+ +N
Sbjct: 284 YSNLKKLQHAVFGAREKNKFKNRMLDMVIGIN 315
>AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical
protein Y54G11A.12 protein.
Length = 345
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 318 FLNVTTFVIRSKFNLINFYLYMCSRV*YSTVCVRCIH 208
F + T+ VI+ +L N ++Y C + VC C+H
Sbjct: 186 FFDDTSAVIQRDASLFNPHMYTCCFILSVLVCFYCLH 222
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 8 CNDLYNVHTIHCDKLTCFFF*IKCSK*QWLCIVAGNCSI 124
C+ LY C CFF+ S+ ++C GNCSI
Sbjct: 43 CSHLY-YGVAACHGCKCFFWRTVKSRLNYVCRYGGNCSI 80
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 8 CNDLYNVHTIHCDKLTCFFF*IKCSK*QWLCIVAGNCSI 124
C+ LY C CFF+ S+ ++C GNCSI
Sbjct: 43 CSHLY-YGVAACHGCKCFFWRTVKSRLNYVCRYGGNCSI 80
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 441 ILEQLHPTIHKLEDYIDLQLIPF 509
++E L+PTI+K +DL+ PF
Sbjct: 143 LIELLYPTIYKFSCLLDLRFFPF 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,460
Number of Sequences: 27780
Number of extensions: 328861
Number of successful extensions: 785
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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