Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a05
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 32 0.30
Z68882-14|CAA93109.1| 366|Caenorhabditis elegans Hypothetical p... 30 1.6
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 30 1.6
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 29 2.8
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 29 2.8
AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode poly... 29 2.8
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 29 2.8
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 29 2.8
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 28 6.5
Z79604-4|CAB60456.1| 598|Caenorhabditis elegans Hypothetical pr... 27 8.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.6
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 217 MMELEESVSDSKLHKESTAKK---DLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSN 384
++ELEE +++++ H ST R + ++ P + + E+ R+Y W++
Sbjct: 1009 LVELEERLTENQKHTMSTCTLRGVHYRLRGIKNLARRRRVPNSEAPFQEKARKYLDWINE 1068
Query: 385 ERWNELKKIAETAMK 429
E+ NELK++ K
Sbjct: 1069 EQLNELKRLKSEGKK 1083
>Z68882-14|CAA93109.1| 366|Caenorhabditis elegans Hypothetical
protein C47E12.11 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 196 RTRSMAVMMELEESVSDSKL------HKESTAKKDLRPSSAISFSKSDHGPETTSSTEQL 357
R R M L E + DS + +S+ KK+ + S + SKS T S + QL
Sbjct: 277 RVRLMLKEYALREHIKDSDYTGSHSKNSKSSKKKNTQTDSKSTKSKSLSMKTTYSESSQL 336
Query: 358 RQYKSWVSNERWNELKKIAETAMKQ 432
R S +E W++ K + K+
Sbjct: 337 RDSDSCSEDESWDKQKSKKDVKKKK 361
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 238 VSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNE---RWNELKK 408
V K+ + KD++ + + E+ +++ + K +S++ WNE+KK
Sbjct: 851 VEKEKVSQIDRQYKDMKKKEKTAAAALKEHTESMEQDKEVLEEKKALSHKLETEWNEVKK 910
Query: 409 IAETAMK 429
IA+ AMK
Sbjct: 911 IAQVAMK 917
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 MMELEESVSDSKLHK-ESTAKKDLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSNER 390
++ELEE +++++ H E R + ++ P + +S E+ +Y W++ E+
Sbjct: 257 LVELEERLTENQKHTIEHVRGVCYRLWGIKNLARRRRVPNSEASFQEKAAKYLDWMNEEQ 316
Query: 391 WNELKKIAETAMK 429
NELK++ K
Sbjct: 317 LNELKRLKSEGKK 329
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 MMELEESVSDSKLHK-ESTAKKDLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSNER 390
++ELEE +++++ H E R + ++ P + +S E+ +Y W++ E+
Sbjct: 1253 LVELEERLTENQKHTIEHVRGVCYRLWGIKNLARRRRVPNSEASFQEKAAKYLDWMNEEQ 1312
Query: 391 WNELKKIAETAMK 429
NELK++ K
Sbjct: 1313 LNELKRLKSEGKK 1325
>AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform b
protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 MMELEESVSDSKLHK-ESTAKKDLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSNER 390
++ELEE +++++ H E R + ++ P + +S E+ +Y W++ E+
Sbjct: 212 LVELEERLTENQKHTIEHVRGVCYRLWGIKNLARRRRVPNSEASFQEKAAKYLDWMNEEQ 271
Query: 391 WNELKKIAETAMK 429
NELK++ K
Sbjct: 272 LNELKRLKSEGKK 284
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 MMELEESVSDSKLHK-ESTAKKDLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSNER 390
++ELEE +++++ H E R + ++ P + +S E+ +Y W++ E+
Sbjct: 1011 LVELEERLTENQKHTIEHVRGVCYRLWGIKNLARRRRVPNSEASFQEKAAKYLDWMNEEQ 1070
Query: 391 WNELKKIAETAMK 429
NELK++ K
Sbjct: 1071 LNELKRLKSEGKK 1083
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 MMELEESVSDSKLHK-ESTAKKDLRPSSAISFSKSDHGPETTSS-TEQLRQYKSWVSNER 390
++ELEE +++++ H E R + ++ P + +S E+ +Y W++ E+
Sbjct: 1253 LVELEERLTENQKHTIEHVRGVCYRLWGIKNLARRRRVPNSEASFQEKAAKYLDWMNEEQ 1312
Query: 391 WNELKKIAETAMK 429
NELK++ K
Sbjct: 1313 LNELKRLKSEGKK 1325
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 SQKFQKREGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSD---HGPETT 339
S K QKR R +A M +++ D +LHKE L+P I + PE +
Sbjct: 733 SAKTQKRRQRKEKLAKMKYKDQTDDDLELHKEL-----LKPQGKIVEKVEERPVERPEKS 787
Query: 340 SSTEQLRQYKSWVSNERWN 396
++ ++K + +R N
Sbjct: 788 EKPVKIEEFKPKIQEKREN 806
>Z79604-4|CAB60456.1| 598|Caenorhabditis elegans Hypothetical
protein ZK662.5 protein.
Length = 598
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 254 SLESDTLSSNSIITAMDLVLPSRF*NFCDRV 162
S++ + +S +I A L L RF FCDR+
Sbjct: 282 SIDEEGWNSTAIFLAQCLALHDRFIKFCDRI 312
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 166 RSQKFQKREGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSS 345
+S + QK E T+S +ESV D K K+ KK + S+IS KS T +
Sbjct: 13609 KSAEKQKLESETKSKQTEEAPKESV-DEKPKKKVLKKKTEKSDSSIS-QKSKSAKSTVDA 13666
Query: 346 TEQL 357
E L
Sbjct: 13667 AETL 13670
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 166 RSQKFQKREGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSS 345
+S + QK E T+S +ESV D K K+ KK + S+IS KS T +
Sbjct: 13609 KSAEKQKLESETKSKQTEEAPKESV-DEKPKKKVLKKKTEKSDSSIS-QKSKSAKSTVDA 13666
Query: 346 TEQL 357
E L
Sbjct: 13667 AETL 13670
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,216
Number of Sequences: 27780
Number of extensions: 293949
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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