Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a05
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.62 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 229 EESVSDSKLHKESTAKKDLRPSS 297
           EE ++  + H  + +K+DL PSS
Sbjct: 401 EEHLTPKRFHSRAASKEDLSPSS 423


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 229 EESVSDSKLHKESTAKKDLRPSS 297
           EE ++  + H  + +K+DL PSS
Sbjct: 401 EEHLTPKRFHSRAASKEDLSPSS 423


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 604 PRLSVPMHLRQRSS*TLFRREHGSTKSYGIHIFL 503
           P LS+PM L +R   +LF   H    +  I IF+
Sbjct: 68  PDLSIPMQLGRRQPFSLFIPAHRKIAARLIDIFM 101


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 460 GFPAIRRAMLERGWVEKYESHK 525
           GF  I   +LE+ W+  + S+K
Sbjct: 425 GFSKIAENLLEKNWLPVHTSYK 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,749
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)