Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a04
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    44   9e-07
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 44.4 bits (100), Expect = 9e-07
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
 Frame = +1

Query: 304 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXXQFVF--REKVLTTLDRELYASVP 477
           +S  GCCGA +E  CM +T+                  F+    +     +  +      
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFN 124

Query: 478 YYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGN-LPESCC 594
            Y +  E     D  Q  LQCCGV S +D++   +P SCC
Sbjct: 125 GYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC 164


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 354 AHVLHFSFHHIRCDVSGRDLAVRVQREGSDNPRP 455
           A  + FS   I   V   +LAVR+QR+  +N RP
Sbjct: 311 AKQIGFSDKQIASVVKSSELAVRIQRQ-ENNIRP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/43 (18%), Positives = 19/43 (44%)
 Frame = +3

Query: 96  YGWSDGQLREVHEVLSNMYQRNNIDWRGYSAGHRTMGVDVAFF 224
           Y  +DG         + +Y +  ++W+  +    +  +DV +F
Sbjct: 118 YNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYF 160


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 435 GSDNPRP*AVRICALLWCQTRVHEILGRHADLSPMLRSEEP 557
           G   PR  + R+  ++W    +  +    A+L+  L  E P
Sbjct: 627 GEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 667


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 306 EDHYGDSHGHD 274
           E  Y +SHGHD
Sbjct: 699 EREYPESHGHD 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,562
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)