Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a03
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   217   9e-58
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   3.4  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   4.4  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   7.8  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  217 bits (531), Expect = 9e-58
 Identities = 110/229 (48%), Positives = 139/229 (60%), Gaps = 1/229 (0%)
 Frame = +1

Query: 4   NHRVSSAITLSKICDQEPWFGIEQEYTMFDRDHWPLGWPKPRGYPDQDSKNSYCGVGE-H 180
           NHR + A  L K  D+E WFGIEQEYTM D    P GWPK  G+P       YCGVG   
Sbjct: 113 NHRDACAKLLEKHADKETWFGIEQEYTMLDYYDRPFGWPKG-GFPGPQGP-FYCGVGTGR 170

Query: 181 VAGREIAECHARACIYSGMDYDGSNAEVMNGSWEFQVGPTLGIKAADDIWIGRYLLNRIA 360
           V  R+I E H +AC+Y+G++  G NAEVM   WE+QVGP  GI+  D +W+ R+LL+RIA
Sbjct: 171 VFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIA 230

Query: 361 EHFDVIISFHPKPMGDGHAGIGCHHNFSTKKMRADQGVTEIKRICKILCDQHEKIIKSYD 540
           E F V ISFHPKP+     G GCH N STK  RA+ G+  I+   +    +H++ I  Y 
Sbjct: 231 EDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVY- 289

Query: 541 LKDGEDNKKRLVGKFETSSYDSCRVGISDRSASIRIQKKVISEGKGYFE 687
              G+DN  RL G+ ET S D    G++DR AS+RI + V   G GYFE
Sbjct: 290 ---GDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFE 335


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 4   NHRVSSAITLSKICDQEPWFGIEQE 78
           NHRV+S +T +   + +P F IEQ+
Sbjct: 473 NHRVNSNLTANNSLNDKPGFTIEQK 497


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 194 SLPATCSPTPQ*EFLESWSGYPRGFGHPKGQ 102
           S P    P+    F+ES +G P GF  P  Q
Sbjct: 362 SFPLPTMPSEAKGFIESGAGQPLGFNAPSNQ 392


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 YDGSNAEVMNGSWEFQVGPTLGI 309
           YD ++ EV+   W F  G  LG+
Sbjct: 506 YDANSREVITSRWAFHTGRILGM 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,280
Number of Sequences: 5004
Number of extensions: 69106
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)