Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p23
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/42 (19%), Positives = 20/42 (47%)
 Frame = +1

Query: 508 YTEQRTTWKYYCILFFNINFNYTTIVVLIRIQIPVEYEVEVS 633
           Y +    W   C++F         +V ++ ++  +EY+++ S
Sbjct: 258 YVKALDVWMAGCMMFVFAALGEFVVVKVLDLRSQLEYDLQTS 299


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 567 KINIEKQNTIIFPCCTL 517
           KIN++ +N ++F  CT+
Sbjct: 51  KINMDDENVLLFIECTM 67


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 469 YFYCIMNKILYYIYTEQRTTWKY 537
           Y+  + +  LYY+ TEQ  T  Y
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDY 288


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 654 IKSRILSRYFYFIFYRYLNSN*NNN 580
           I S + + Y Y  +  Y N+N NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 654 IKSRILSRYFYFIFYRYLNSN*NNN 580
           I S + + Y Y  +  Y N+N NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 654 IKSRILSRYFYFIFYRYLNSN*NNN 580
           I S + + Y Y  +  Y N+N NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 654 IKSRILSRYFYFIFYRYLNSN*NNN 580
           I S + + Y Y  +  Y N+N NNN
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNN 105


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 469 YFYCIMNKILYYIYTEQRTTWKY 537
           Y+  + +  LYY+ TEQ  T  Y
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDY 288


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 469 YFYCIMNKILYYIYTEQRTTWKY 537
           Y+  + +  LYY+ TEQ  T  Y
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDY 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,472
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)