Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12p18
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 39 8e-04
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 29 0.84
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.1
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 28 1.5
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 26 4.5
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 25 7.8
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 409 ALKNM-LNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLA-LGDSRAGVA 582
AL N+ +N + K LV+ +NG L LIR++ + QC A GCI NLA L ++++ +A
Sbjct: 108 ALGNLAVNAENKA--LVVKLNG-LDLLIRQMMSPHVEVQCNAVGCITNLATLDENKSKIA 164
Query: 583 VTKSAGP 603
+ + GP
Sbjct: 165 HSGALGP 171
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/92 (21%), Positives = 40/92 (43%)
Frame = +1
Query: 403 LSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVA 582
+S L+N+ + ++ N A++ L + ++ Q + C+ LAL D
Sbjct: 355 VSTLRNLAASSERNKRAIIEAN-AIQKLRCLILDAPVSVQSEMTACLAVLALSDEFKSYL 413
Query: 583 VTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
+ LI D+++ E+ A +GNL+
Sbjct: 414 LNFGICNVLIPLTDSMSIEVQGNSAAALGNLS 445
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +1
Query: 358 IVNILKTK-TSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAA 534
+V++L + T + +++ N+ D L S +R LI+ + + QCQAA
Sbjct: 213 LVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLIQLMDTSSPKVQCQAA 272
Query: 535 GCICNLALGDSRAGVAVTKS-AGPYLIAALDNLTTELAVTCAWTIGNLA 678
+ NLA D R + + +S A P L+ L + L + I N++
Sbjct: 273 LALRNLA-SDERYQIEIVQSNALPSLLRLLRSSYLPLILASVACIRNIS 320
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 28.7 bits (61), Expect = 0.84
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 526 QAAGCICNLALGDS-RAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
+A+ + N+A G S + V V +A P ++ L + ++ W +GN+A
Sbjct: 140 EASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIA 191
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 403 LSALKNMLNDDRKTMELVLSVNGALRGLIRE 495
L N +DD T EL++ + G L GL+ E
Sbjct: 458 LQKFSNFSSDDETTRELIILILGLLLGLVEE 488
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 520 QCQAAGCICNLALGDS-RAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
Q +AA + N+A G + + + V A P I L + ++ W +GN+A
Sbjct: 137 QFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIA 190
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 442 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 552
T+ LVL + G ++ ++ LTG I + +++ I N+
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 442 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 552
T+ LVL + G ++ ++ LTG I + +++ I N+
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 442 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 552
T+ LVL + G ++ ++ LTG I + +++ I N+
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 442 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 552
T+ LVL + G ++ ++ LTG I + +++ I N+
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 502 GNDIAKQCQAAGCICNLALGDSRAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNL 675
GN + Q A+GC +G + + K L N+ +ELAV + G+L
Sbjct: 421 GNPLLGQITASGCSLGSVMGVTASICQNDKLLAAITATLLYNIASELAVEAKNSCGDL 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,422
Number of Sequences: 5004
Number of extensions: 49117
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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