Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12p18
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 38 0.006
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 36 0.023
10_06_0162 - 11348250-11349531,11349571-11349671 34 0.093
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 32 0.37
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 31 0.86
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 30 1.5
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 28 8.0
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 469 GALRGLIRELT-GNDIAKQCQAAGCICNLALGDSRAGVAVTKSAGPYLIAAL-DNLTTEL 642
GA+ L++ L+ G+ + +AA C+ N+A G+ ++ + P LIA L + +T +
Sbjct: 135 GAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSLLPAL-PLLIAHLGEKSSTLV 193
Query: 643 AVTCAWTIGNLA 678
A CAW IGN+A
Sbjct: 194 AEQCAWAIGNVA 205
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +1
Query: 373 KTKTSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 552
K+ T ++ A+ N+ + + +L+ GALR L R + + + AA + NL
Sbjct: 188 KSSTLVAEQCAWAIGNVAGEGAELRSTLLA-QGALRPLTRLMFSSKGSTARTAAWAMSNL 246
Query: 553 ALG-DSRAGVAVTKSAGPY--LIAALDNLTTELAVTCAWTIGNLADLA 687
G D +A + G +IA+L+ ELA AW + L+ L+
Sbjct: 247 IKGPDPKAANELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALS 294
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 36.3 bits (80), Expect = 0.023
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +1
Query: 358 IVNILK-TKTSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAA 534
I++ LK I V S LKN+ + LS + + L++ L + ++ Q A
Sbjct: 401 ILDALKHASVDIRVAACSCLKNISRSSKVLSAGKLSCDTFIAPLVQLLYDSSMSVQVAAL 460
Query: 535 GCICNLALG-DSRAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNL 675
G ICN+A+ R + + A L+ ++ L + W + N+
Sbjct: 461 GAICNIAVNLTPRKSILLQSGAVSQLVHLSKSMDPTLRLKAVWALRNI 508
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -1
Query: 686 ARSARLPIVQAQVTASSVVRLSSAAIRYGPADLVTATPALLSPRARLQMQPAA 528
AR R P V A+ V+R ++ +R G DLV A++ PR R+++ PAA
Sbjct: 26 ARFRRRPAVDPAAPAAPVLRRTAELLR-GHPDLVAEINAVIYPRNRVELVPAA 77
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 358 IVNILKTKTSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAK-QCQAA 534
I + ++ + + + +L+ +R + +G + ++ LT D + Q +AA
Sbjct: 78 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAA 137
Query: 535 GCICNLALGDSR-AGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
+ N+A G S V + A P + L + + ++ W +GN+A
Sbjct: 138 WALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 186
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 466 NGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKSAGPYLIAALDNLTTEL 642
+G L ++R L DI + AAG I NLAL S G V P L ++L L
Sbjct: 148 SGMLTRMVRFLDDEDIKVKEAAAGIISNLALSHSNHGALVEAGVIPKLKGNKESLDWNL 206
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +1
Query: 382 TSISVTELSALKNMLNDDRKT-MELVLSVNGALRGLIRELTGNDIAK-QCQAAGCICNLA 555
+++ + + + +L+ +R +E V++ G + I L D + Q +AA + N+A
Sbjct: 92 SAVQLEATTQFRKLLSIERSPPIEEVINT-GVVPRFIAFLQREDYPQLQFEAAWALTNIA 150
Query: 556 LGDS-RAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
G S V V A P + L + + ++ W +GN+A
Sbjct: 151 SGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVA 192
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 520 QCQAAGCICNLALGDSRAGVAVTKSAGPYLIAALDNLTTELAVTCAWTIGNLA 678
Q +AA + N+A D VA A P L+ L++ + W +GN+A
Sbjct: 172 QMEAAWVLTNIAASDYTLLVAEC-GAVPRLVELLESANANIRHQAIWALGNIA 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,316
Number of Sequences: 37544
Number of extensions: 280249
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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