Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p13
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833...    30   2.3  
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    29   4.0  
01_01_0263 + 2136858-2137331                                           29   4.0  
04_03_0703 - 18870287-18871351,18871542-18871733                       28   9.2  

>08_02_0992 +
           23380855-23381195,23382464-23382506,23383306-23383371,
           23384228-23384428,23384450-23384707,23384798-23385013,
           23385148-23385321,23386151-23386312,23386594-23386635
          Length = 500

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -3

Query: 630 RFFLEHRCLVRIVSDVWRLGIDAPSRFTTGADGRRLVELFTPCPTYYYVYTRNEAYLIPR 451
           R  L   C+V  V+ +WR     P  +++ ++     ELF    T  ++ T     ++P 
Sbjct: 201 RSILNPFCVVDYVAKIWRNHF--PQHYSSISESNLPAELFPQYTTVEFMSTAETGPVVPP 258

Query: 450 TYKFLYCFCIVNPHC*ILN---AQALSFSP 370
            + F+   C++      L    AQA+   P
Sbjct: 259 VFLFVVDTCMIEEEIDYLKSALAQAIELLP 288


>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 333  LRSTSLARAIVSSVPG*SPHEVTLL*YINCYSTISGY 223
            +R TSL+R   S+    SPH++     ++CY+T + Y
Sbjct: 1281 VRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSY 1317


>01_01_0263 + 2136858-2137331
          Length = 157

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 586 RLASRNRRAFKVHDWCGRSSTRRTLY--ALSHILLCIYTERSVPHSKDLQVPVL 431
           R+ S  R+  K H +   SS RR L   ALS  L   Y  RS+P  KD +V V+
Sbjct: 6   RVTSSRRKCRKAH-FTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVV 58


>04_03_0703 - 18870287-18871351,18871542-18871733
          Length = 418

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 517 TLYALSHILLCIYTERSVPHSKDLQVPVLLLYCEPT 410
           TL  + +  LC + ERS P  KD+ V      CEPT
Sbjct: 362 TLVTMLYKELCWHRERSKPVVKDVNVRGSRYSCEPT 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,741
Number of Sequences: 37544
Number of extensions: 364922
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)