Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p07
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.53 
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    28   0.93 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    27   1.6  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   2.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.9  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   4.9  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.6  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   8.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.6  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = -3

Query: 541 FVFHISHGLIIGR------PFTFRFTIDSLKFFYLEQFLFLRFYGLMSSFES*NISFYNV 380
           FVF  SH L+  +      P+    T     FFY   F F  F        +  I  Y+ 
Sbjct: 43  FVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDS 102

Query: 379 NV--YCCIFWIHTLFPCFSFI 323
           NV  + C F+  +LF  FSF+
Sbjct: 103 NVVPFFCFFFYFSLFSFFSFL 123


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 448 FLFLRFYGLMSSFES*NISFYNVN 377
           F FL+ + + SSF S N + YN+N
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLN 266


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 254 WKFMEGKSRIEWLLSYEYQRMWLDEREAWKKRM 352
           WK    + + EW  + E  + W +  + W+K M
Sbjct: 165 WKKAREEDKAEWKKAREEDKEWRNSMDEWRKSM 197


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 485 KTKSKRSADDKAMAYMKNKDNKKT 556
           K+K KRSADD +    K+K  KK+
Sbjct: 473 KSKKKRSADDASEEVKKSKKKKKS 496


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 203  PIHNIISSDFPK--YNPQPWKFMEGKSRIEWLLSYEYQRMWLDERE 334
            PI  ++ SDF    Y+P  +K   G   +E L+  ++   WL +R+
Sbjct: 1104 PIFEVLLSDFRHKCYDPHWYKKYGGCFGLECLIEQDHSSKWLFDRQ 1149


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 407  KLKHIVLQCQRLLLYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYL 267
            K K I+ QC+ ++L  L+   FS +       +++HM+  I   +YL
Sbjct: 1164 KKKVILEQCEYVILDILNFLKFSGIPTQSKKRLEVHMLNFISSTLYL 1210


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -2

Query: 572 CNINETFSYYLCFSYKPWPYHRQTVYFS----FYYRFPQIFLS 456
           C    +F YYLCF +     +R + Y+S     +  +PQ ++S
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMS 198


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +2

Query: 170 GIKWEKSIQCRPIHNIISSDFPKYNPQPWKFMEGKSRIEWLLSYEYQRMWLDEREAWKKR 349
           G +  K    + +H IIS DF   N     F+       W++   ++ ++LD  + + ++
Sbjct: 226 GFRTPKDQDAKDVHFIISQDFNGINAGS-LFIRNSEVGRWIVDLWFEPLYLDHIQGYAEQ 284


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -3

Query: 544 IFVFHISHGLIIGRPFTFRFTIDSLKFFYLEQFLFLRFYGLMS--SFES*NISF-YNVNV 374
           I +F I+H LI+   F   +++     FY+   +F+R + L++   FE   ++F ++  V
Sbjct: 168 ICLFVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLFSSIV 227

Query: 373 YCCIFWIHTL 344
             C+   + L
Sbjct: 228 VACLIQFNVL 237


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 293 LSYEYQRMWLDERE-AWKKRM 352
           L Y +QR+WL+ +E  W +RM
Sbjct: 598 LIYAFQRVWLECKEKVWVRRM 618


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 176 KWEKSIQCRPIHNIISSDFPKYNPQPW 256
           K E+S +   I N+ISSD P + PQ W
Sbjct: 50  KREESPEVIDISNLISSDHPAH-PQNW 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,329
Number of Sequences: 5004
Number of extensions: 46934
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)