Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12p05
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 195 2e-50
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 113 9e-26
02_01_0382 - 2772378-2773544 31 0.63
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 28 7.7
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 7.7
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 7.7
01_05_0356 - 21338488-21340062 28 7.7
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 195 bits (476), Expect = 2e-50
Identities = 89/153 (58%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Frame = +1
Query: 211 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 390
+N+YPL NYTFGTKEP EKD SV RF RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 391 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 567
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 568 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVP 666
YPY PPHITKPKE K+LF+V L +R FAVP
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVP 161
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 113 bits (273), Expect = 9e-26
Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Frame = +1
Query: 211 INLYPLTNYTFGTKEPLFEKDAS----VPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 378
+ +YPL Y FG ++ + R R++ F G+R SV GVLLV P
Sbjct: 23 VEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKANFAAHGLRTSVHGVLLVELFDHP 82
Query: 379 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQDGV----KQEWLIEDTI 537
HVLLLQ+ + F LPGG L PGE ++ GLKR L+ L G QD EW I + I
Sbjct: 83 HVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLSVAGHQDDEDGDGDDEWQIGECI 142
Query: 538 GNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVP 666
G WWR F+ +PY+ P+ PKE +LFL++L F VP
Sbjct: 143 GMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSRQFVVP 185
>02_01_0382 - 2772378-2773544
Length = 388
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 316 KTPLASSGTSPGPTRLSRTAA 254
K P+ASS TSP P+RL R+A+
Sbjct: 5 KQPMASSSTSPSPSRLPRSAS 25
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 151 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFE 267
PGL + +N S+NL + N+ L Y + TK + E
Sbjct: 24 PGLNDTVFKNESLNLMSVQHQNIVKLIGYCYETKNKVVE 62
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Frame = +1
Query: 331 RRSVEGVLLVHEH-------GLPHVLLLQLGTAFFK----LPG--GELNPGEDEIDGLKR 471
RR++ G+L EH G H LL +LGT + L G GEL +DE++ +
Sbjct: 504 RRAMNGLLTEMEHAVVSAAEGAIHTLLGKLGTIVLQEAQLLGGIRGELQHLKDELESMTA 563
Query: 472 LLTETLGRQDGVKQ 513
L + GR + KQ
Sbjct: 564 FLQDLSGRDECGKQ 577
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 324 RNEKVSRRCVIST*TWSPSCAVTATRHCVFQVARWRIESWRG 449
R +VSR+ T S T T C F RWR++ G
Sbjct: 49 RGRRVSRQLYAVPVTPSSMAPATRTARCTFSWRRWRLDGGGG 90
>01_05_0356 - 21338488-21340062
Length = 524
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 253 EPLFEKDASVPARFQRMREEFCKIGM-RRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGG 429
E ++ P F+ +F G RR G+ L E +P++L L L ++LP G
Sbjct: 435 ERFLAREGKAPVDFRGKEADFIPFGSGRRLCPGIPLA-ERVMPYILALMLREFEWRLPDG 493
Query: 430 ELNPGEDEI 456
++P E ++
Sbjct: 494 -VSPEELDV 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,961,042
Number of Sequences: 37544
Number of extensions: 381147
Number of successful extensions: 1050
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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