Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p04
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    24   2.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   7.3  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    22   9.6  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    22   9.6  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 25  VEDTIKIERKLKEAYITYTG 84
           +EDTI I R LKE Y  + G
Sbjct: 347 IEDTISILRGLKEKYEVHHG 366


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 81   CVCDISFFQFPFYF 40
            CV DISF    FYF
Sbjct: 1129 CVYDISFGSLTFYF 1142


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 96  SNALSCVCDISFFQFPFYFYSVLNVF 19
           SN L+C+C+I     P   Y + + F
Sbjct: 90  SNTLACICNIKKDNKPTKIYPLPHCF 115


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 25  VEDTIKIERKLKEAYITYTG 84
           V DTI I R LKE Y  + G
Sbjct: 276 VADTISILRGLKERYEVHHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,882
Number of Sequences: 5004
Number of extensions: 5951
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)