Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p04
         (141 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    26   4.2  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    25   7.3  

>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
          receptor, class z protein20 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 69 ISFFQFPFYFYSVLNVFRCTRIL 1
          ++FF FPFY Y    VF+  R+L
Sbjct: 36 LNFFMFPFYVY----VFKANRVL 54


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
          protein.
          Length = 77

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 69 ISFFQFPFYFYSVLNVF 19
          ++FFQF F+F+++  +F
Sbjct: 46 LNFFQFIFFFFNIFQLF 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,922
Number of Sequences: 27780
Number of extensions: 32727
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)