Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12p02
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 335 LKSVTLIAILELIFMDGCDEVPNARR-KKFLMTRYLCLVR 219
           +KS+  I  + L+ + GC   P+A+R    L++ Y  LVR
Sbjct: 2   MKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLVR 41


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 421 PSSNVTELKQVPSSSKHQIEQSVQ 492
           PS N +++   P+S  HQ++Q +Q
Sbjct: 56  PSQNPSQMMISPASGIHQMQQLLQ 79


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 535  SENNFP-SSDPSDQTPKSQDHDDNN 606
            S  N P S  P    P  ++HD NN
Sbjct: 1847 SARNIPVSGSPEPPPPPPRNHDQNN 1871


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 213 LTTYQAQVPRHKEFLSTCIGYF 278
           L   +A +  HK  LS C  YF
Sbjct: 40  LACNEASLKAHKVVLSACSSYF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,028
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)