Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12o19
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 28 1.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 28 1.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 3.5
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 6.1
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.1
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 25 8.1
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 25 8.1
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 268 RRHHGAQPKDNICEITNRESKVHCYCEKVEVKTATRADCWVFNGGI 405
R HG Q K C I NR + + + VE + R D + N GI
Sbjct: 54 RDKHGVQAKAYSCPIENRSAVIETTNQAVE-ELGGRLDVMIANAGI 98
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 221 DICTEVSAKARSKYWTADSMSPCLSLTSEIQKKNHK-ESQI-IFHDRIS 81
++ T + A + S W D +S CLSL S+I + + K +Q+ + HD S
Sbjct: 94 NVLTGIIADSSSDQWK-DKISKCLSLLSDILESSSKIHNQLSVCHDEYS 141
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 337 CYCEKVEVKTATRADCWVFNGGIDEHDPVWSSFDSQPQLERLTFNVRSDGALTFIPLH 510
C CE+ V + R W +GG +FD + L+ L+ + SD L F P +
Sbjct: 1675 CGCEETFVTSLARCSLWESSGG-KSGSAFLKTFDKKYILKVLS-RLESDSLLNFAPAY 1730
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 283 PRGASSRFYLCVFHLVDFQCTIFAQKSAPKRGVNI 179
P+ +S FYL HLV+F Q+ P+R N+
Sbjct: 700 PKEKTSTFYLSN-HLVNFVTETIVQEEEPRRRTNV 733
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 678 ERGEARKRREVQRGYFVVHQRNLLYCGHIRERSLFYFGKSRIMNVQ-FL*LFEATDDVER 502
E G+A ++++ ++++ GH++E + Y S + N++ L F+A D E+
Sbjct: 82 ELGQALSHSSSNSHTYIMYGKSMVEIGHLQEEFMDYLNNSFLANLENSLAEFKALDVKEK 141
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 518 RMTWSGMKVRAPSERTLKVSRSSCGCESKLLQTGSCSSM 402
R T K + PSE V+ SC + KLL T + SS+
Sbjct: 30 RETNESPKSQNPSEEATTVNELSCEAKPKLLFTPTKSSL 68
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 586 FSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTIKENKLQ 711
F M ++ + NN+I A+ LP+L L++ +N LQ
Sbjct: 59 FPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQ 100
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 121 ITKNHK*YFTIEYLEHTKSRSL 56
ITKN + Y+ ++ +EH K +L
Sbjct: 204 ITKNFREYYKLDNIEHVKDETL 225
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -1
Query: 545 YSFCSCLRRRMTWSGMKVRAPSERTLKVSRSSCGCESKLLQTG 417
Y CS R + W G K + T+K + C + TG
Sbjct: 23 YVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNIRATG 65
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 462 DLQRPLRRSPHLHPAPRHPSPQTTTETVHSLCD-SSQNRKENVL 590
DLQ P+ R+ H P P P+ T + D QN +N++
Sbjct: 296 DLQAPIPRALKQHKLPPIPVPEVQTTNIGYQTDLPLQNPNDNLV 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,667
Number of Sequences: 5004
Number of extensions: 54120
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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