Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12o19
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 34 0.001
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 27 0.18
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 27 0.23
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.54
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 25 0.94
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.9
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 2.9
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 23 2.9
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 2.9
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 2.9
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 23 3.8
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 3.8
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 6.6
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 34.3 bits (75), Expect = 0.001
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 508 HVIRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNL 687
HV K ++ LY++ + + I+ RTF+ ++ ++ + L +N+I L F L L L
Sbjct: 812 HVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLREL 871
Query: 688 TIKEN 702
++ N
Sbjct: 872 YLQNN 876
Score = 33.9 bits (74), Expect = 0.002
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +1
Query: 523 LKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTIKEN 702
L +L L + Y L I+ R F ++ ++ + L NN I ++ ++F L +L L + +N
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393
Query: 703 KLQ 711
KL+
Sbjct: 394 KLR 396
Score = 30.3 bits (65), Expect = 0.019
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 478 SDGALTFIPLHVIRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSS 657
S LT +P +R L L+ L + + +F N+ + + L+ N I L
Sbjct: 439 SGNELTSVP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGM 497
Query: 658 FTSLPSLVNLTIKENKLQ 711
LP+L L + NK+Q
Sbjct: 498 LWDLPNLQILNLARNKVQ 515
Score = 30.3 bits (65), Expect = 0.019
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 523 LKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTIKEN 702
L LQ L++ + +++ F +S ++E+ L NN I + +F L SL L + N
Sbjct: 841 LNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGN 900
Query: 703 KL 708
+L
Sbjct: 901 RL 902
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 27.1 bits (57), Expect = 0.18
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 514 IRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTI 693
IRR+++++KL + + R SN S + +++NK+ + D S P + +
Sbjct: 66 IRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKLESSDDISLFRGPEGIQINA 125
Query: 694 KE 699
E
Sbjct: 126 TE 127
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +1
Query: 514 IRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTI 693
+RR+++++KL + + R SN S + +++NK+ + D S P + +
Sbjct: 66 LRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKLESSDDISLFRGPEGIQINA 125
Query: 694 KE 699
E
Sbjct: 126 TE 127
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.54
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 486 SPHLHP-APRHPSPQTTTETVHSLCDSSQNRKENVLEYVRSKGDYVDEQQ 632
+PH HP P P PQ T + + C ++N +L+ ++ D + ++
Sbjct: 462 TPHHHPHPPETPGPQVET-ILQNACFCARNELMMILKEIKIITDQLKSEE 510
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 24.6 bits (51), Expect = 0.94
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = +1
Query: 514 IRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNKIAALDFSSFTSLPSLVNLTI 693
+RR+++++KL + + R S+ S + +++NK+ + D S P + +
Sbjct: 66 LRRIREIEKLGSERSKSRSPDSRDRSSTSNTSKTVILSNKLESSDDISLFRGPEGIQINA 125
Query: 694 KE 699
E
Sbjct: 126 TE 127
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 412 HDPVWSSFDSQPQLERLTFNVRSDGALTFIPLHVIRRLKQLQKLY 546
HDP + LE T N R+D P H+I K + KLY
Sbjct: 356 HDP--KAHSKGGTLEN-TINGRADEEAAPAPQHLIHPGKDINKLY 397
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 412 HDPVWSSFDSQPQLERLTFNVRSDGALTFIPLHVIRRLKQLQKLY 546
HDP + LE T N R+D P H+I K + KLY
Sbjct: 356 HDP--KAHSKGGTLEN-TINGRADEEAAPAPQHLIHPGKDINKLY 397
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 514 IRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNK 633
+RR+++++KL + + R SN S + +++NK
Sbjct: 66 LRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNK 105
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 412 HDPVWSSFDSQPQLERLTFNVRSDGALTFIPLHVIRRLKQLQKLY 546
HDP + LE T N R+D P H+I K + KLY
Sbjct: 294 HDP--KAHSKGGTLEN-TINGRADEEAAPAPQHLIHPGKDINKLY 335
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 483 RSPHLHPAPRHPSPQTTTETVHS 551
RSP+ P+P TTT T S
Sbjct: 739 RSPNASPSPAEQCASTTTITARS 761
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 514 IRRLKQLQKLYIHYATLPKIEKRTFSNMSAVKEITLMNNK 633
+RR+++++KL + + R SN S + +++NK
Sbjct: 66 LRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNK 105
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 289 AGPRGASSRFYLCVFHLVD 233
A +G S RFY V+ L+D
Sbjct: 549 ANKKGVSLRFYNVVYKLID 567
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.8 bits (44), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 375 SRRRLHLYLLAVAVHFRLSVRDLTDVILRLGPVVPPL 265
S+ L YL + RL LTD+ ++ VPPL
Sbjct: 265 SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPL 301
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,971
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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