Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12o18
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.7  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   1.7  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   1.7  
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    27   2.3  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   5.3  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.3  

>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 511 NCHYSAINWSERFVEIKGLHRLLXVCSELDEYKYESAMNIT 633
           N H     W ++ +E+KG+ +L+     L+E +Y   ++I+
Sbjct: 5   NLHDKLTIWRQQQIELKGMLQLIPKFQSLNEIRYVVGLDIS 45


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 403 PHKV*GQVLIPVYCPSLK 350
           PH + G +L P YCPSL+
Sbjct: 281 PHMLAGDILSPRYCPSLE 298


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 329 FRSYLTHFQGWTINRNQNLTLN--FVRKTKVK 418
           FR YL H  GW  +   NL+LN  F++  K K
Sbjct: 115 FRYYLNHDGGWQNSIRHNLSLNKAFIKVEKPK 146


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 134 TTPFFNITSAPLFSFAKTNRLAMAFSRFSISSPNPKANLN 15
           +TP F+  S+PL S  + N L++  S  ++SSP  KAN N
Sbjct: 376 STPVFSTDSSPLSSRTRENLLSLIPS--AVSSPT-KANTN 412


>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 277 EIIDSTDEKRVNAAQYCLQIILNSFSGMDNKQESKPDPKLCEEN 408
           E I   D++  N A  C ++I + F G D K+    +P+L +EN
Sbjct: 69  ERIVPLDDENSNYA-LCKKLIFDKFEGFDPKKIHTINPELLKEN 111


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 82  VLAKENSGAEVMLKNGVVQRIQQLLK 159
           +L  ENSG  V   N  VQRI+ L+K
Sbjct: 436 ILTYENSGVSVDNGNEFVQRIKDLVK 461


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 367 KQESKPDPKLCEENKSEIDTLLTCITYC--ITNRVISGQARDALIE 498
           ++E  P+P +    KSE  T  TC+ +    T   I  + RD+ ++
Sbjct: 102 EEEELPEPHVTSPTKSEFATTSTCMKWSSKTTKSEIEVEWRDSYLD 147


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 403  ENKSEIDTLLTCITYCITNRVISGQ 477
            E K  I  LL  I  CI NR+ SGQ
Sbjct: 1257 EAKDVIKGLLFSILTCIYNRITSGQ 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,195
Number of Sequences: 5004
Number of extensions: 43000
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)