Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12o13
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 31 0.11
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 1.7
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 3.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.0
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 3.0
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 27 3.0
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 5.3
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 5.3
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb... 25 7.0
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 7.0
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.3
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 9.3
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 25 9.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.3
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 440 DVALSRLSADENSCVKCEKI------IDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKD 601
D++L +L E + C I DE F K A D Y++GN + EDL+ LP
Sbjct: 718 DLSLEKLPTLEINTFNCPAISYFETSFDECFSKFAS-SDNYIIGNLLKTNQEDLSNLPTF 776
Query: 602 NNIGIRLDN 628
+ +R+ N
Sbjct: 777 RSQALRVLN 785
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 438 LDLSLALLKTCASLESSCTIGLLGPNTKSIIFLHLAHLASSSDPLFVLFCSLL 280
LD SL +LK +L S T+G + PN ++ L + +S ++ L CS +
Sbjct: 433 LDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELVCSFV 485
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 579 SSLGKRVAFPSMYLSSHFASLPKISSIIFSHLTQLFSSALNLDKAT 442
+S+G + S YL S A + K+ S+ S L + S+ LN+ T
Sbjct: 870 TSIGLLLGLASSYLGSMDAKVTKLLSVHISALLPVGSNELNISPLT 915
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -1
Query: 507 SSIIFSHLTQLFSSALNLDKATSLDLSLALLKTCASLESSCT 382
S + + LT+LF ++ + KA++ + LLKTC+ L SSC+
Sbjct: 500 SDTLDAWLTRLFETSFAI-KASAFQ-NPQLLKTCSQLLSSCS 539
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -1
Query: 543 YLSSHFASLPKISSIIFSHLTQLFSSALNLDKATSLDLSLALLKTCASLESSCTIGLLGP 364
Y+S H+ L +ISS + S+ + S+ N +K + L + +L ++ C P
Sbjct: 306 YISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFIL----VIQEFCNTKSSHP 361
Query: 363 NTKSIIF 343
T +++
Sbjct: 362 ETAQVLY 368
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 251 KIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHV 412
++ +SI ++ ST K I+ FG K IVHE SKD ++
Sbjct: 315 ELYQSILRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKSIVHEFSKDDNI 368
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 389 EDSKDAHVFNKASDKSKDVALSRLSADEN 475
E SK V +++SD+ KD ++R++AD++
Sbjct: 53 ETSKKLLVSHESSDRLKDQEVARINADDD 81
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 219 VLHSPTAIHTVKLPKVLRFCKANYKRAQRADPKTRLNAL 335
+L +P V+ +++ +AN+ R + D K R+NA+
Sbjct: 4 ILSTPKTPIEVRRKRIVPLFRANHTRFRPVDEKNRINAV 42
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 284 KLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPI 382
KL S++ S+D+ K CK +D+ G + PI
Sbjct: 57 KLDPSSEDFSQDDQKQIFCKLCVDICNGCSTPI 89
>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 377 PIVHEDSKDAHVFNKASDKSKD-VALSRLSADEN--SCVKCEKIID 505
P ++ +K +F + D S+D + +S+ +D +CVK ++ D
Sbjct: 145 PFAYKHTKQVDLFYETEDNSRDKIRVSKNQSDNQVLACVKKRRVAD 190
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 163 HFVSKLEVMGVTSVENYIFIFFLYRYMIFFIFENY 59
HF+ K+ + V + F F + ++F+IF ++
Sbjct: 102 HFLEKISMFDTFLVRVFQFCAFFFGGIVFYIFNHF 136
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +2
Query: 326 KCAKCKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKSKDVALSRLSADENSCVKCEKIID 505
K + ++ + F PN V +K ++V KA +K + + EN+C++ ++
Sbjct: 725 KLGRAVMVVGMPF-PNSQDVEWQAKVSYVEEKAKEKGINAKQASQEFYENTCMRA---VN 780
Query: 506 EIFGKDAKWDDKY 544
+ G+ + D Y
Sbjct: 781 QSIGRAIRHRDDY 793
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 557 HSPA--CTYHPTLRLYQRSHQLSSRI*HNYFHRHLISIKQHL 438
H P C Y L Y S++ ++I H FH +L I ++
Sbjct: 144 HGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNV 185
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 459 NLDKATSLDLSLALLKTCASLESSCTIGLLGPNTKSIIFLHLAHLASSS 313
N +K T+ S L A LES C P +FL++AH +S
Sbjct: 34 NFEKKTADTQSSCKLLLVALLESFCKHSDQTPEQSKQMFLYVAHSLQNS 82
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 416 NKASDKSKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILP 595
NK D+ K++ S L +N + + + K+ + KY+ GNA L N +L +
Sbjct: 604 NKLQDREKELT-SNLEK-KNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEIL 661
Query: 596 KDNNIGIRLDNTDAK 640
D ++ TD K
Sbjct: 662 NDKISVLQRQLTDVK 676
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,184
Number of Sequences: 5004
Number of extensions: 51550
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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