Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12o09
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   7.0  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    25   9.3  

>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 303 HLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSMVGRTLAPLYQDKNIISLVYNDQ- 479
           H  PLV RGVA M +    L+        A+SD +S     L  L  DK +ISL    Q 
Sbjct: 165 HKRPLVTRGVA-MSIDDKALK--------ALSDLKSSTENNLVILSIDKEVISLSQEKQN 215

Query: 480 -PPA 488
            PP+
Sbjct: 216 IPPS 219


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 217 ESFIKNANKNNFKRDMTSVFESNRSSNKTPNKSRLF 110
           ES   N ++N  K+ +TS  E + SSN   N S+LF
Sbjct: 617 ESIETNGHENFQKQALTSTGEQS-SSNSRANPSKLF 651


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 421 LPTMDLGSLIARSDMIQPPLNLDGVRCIYATPLRTKGLR 305
           LP++ + SL   +    PP+ L G+   YA+ L T  ++
Sbjct: 15  LPSLGIRSLATATASAHPPVQLYGLDGSYASSLYTAAVK 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,866
Number of Sequences: 5004
Number of extensions: 53147
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)