Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12o09
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0797 - 24697241-24698278                                         33   0.19 
06_03_0800 + 24709590-24710642                                         32   0.45 
06_03_0798 + 24701885-24702874                                         32   0.45 
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    29   4.1  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    27   9.6  

>06_03_0797 - 24697241-24698278
          Length = 345

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 532 YISATDCNISGWYSVAGGWSLYTSDMMFLS*YKGASVLPTMDLGSLIARS 383
           Y   +D  +  W   A GWS YT    +      AS LPT+   S   RS
Sbjct: 67  YSGVSDGRVMRWNGEAAGWSTYTYSPSYTKNKCAASTLPTVQTESKCGRS 116


>06_03_0800 + 24709590-24710642
          Length = 350

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -2

Query: 532 YISATDCNISGWYSVAGGWSLYTSDMMFLS*YKGASVLPTMDLGSLIAR 386
           Y   +D  I  W   A GWS YT    +      AS LPT+   S   R
Sbjct: 71  YSGVSDGRIMRWNGEAAGWSTYTYSPSYTKNKCAASTLPTVQTESKCGR 119


>06_03_0798 + 24701885-24702874
          Length = 329

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 532 YISATDCNISGWYSVAGGWSLYTSDMMFLS*YKGASVLPTMDLGSLIAR 386
           Y   +D  +  W   A GWS YT    + +    AS LPT+   S   R
Sbjct: 68  YSGVSDGRVMRWNGEAAGWSTYTYSPSYTNNKCAASTLPTVQTESKCGR 116


>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +3

Query: 270 FYVYKL-PRERNHLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSMVGRTLAPLYQD 446
           FY Y L  R  +H     RR + +  L    L  GW+   +         G T+  +   
Sbjct: 103 FYAYYLMSRVLDHCEAHGRRHIRFRELAADVLGSGWVFYLVVTVQTAINAGITIGSILLA 162

Query: 447 KNIISLVYNDQPP 485
            + + ++Y+D  P
Sbjct: 163 ADCLQIMYSDLAP 175


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -2

Query: 250 FSFLHCGVRHRESFIKNANKNNFKRDMTSVFESNRSSNKTPNKSRLFVY 104
           FS+LHCG      F     K N + D  S+  +       P+  +  VY
Sbjct: 634 FSYLHCGQNALAGFSPQGGKYNTRSDQNSLSATTFLPTFIPHAKQSAVY 682


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,225
Number of Sequences: 37544
Number of extensions: 323790
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)