Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12o03
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.89 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.89 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 5   FIILINL-LNTQSIEKNIIRKSSVTNVKNVINIIW 106
           F+ L +L L  Q++   +  K+ VT  KN+  + W
Sbjct: 9   FLFLASLCLLVQAVPNKVADKTYVTRQKNIYELFW 43


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 5   FIILINL-LNTQSIEKNIIRKSSVTNVKNVINIIW 106
           F+ L +L L  Q++   +  K+ VT  KN+  + W
Sbjct: 9   FLFLASLCLLVQAVPNKVADKTYVTRQKNIYELFW 43


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +2

Query: 440 DPILVHDRDPTTITTRCQSRSTGVAAGSHRGGVPTAVCATLESETEN 580
           +P+  +D+    I  +C+ +   + AG+  GG  + +   L+  + N
Sbjct: 187 NPLAHYDQTAIEIWKQCEGKIDYLVAGAGTGGTISGIGRKLKELSPN 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,127
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)