Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12n14
         (102 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   3.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   3.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   4.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   5.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               18   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 61  LEYIIGQNRI 32
           LE+++GQ+RI
Sbjct: 402 LEFVVGQHRI 411


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 61  LEYIIGQNRI 32
           LE+++GQ+RI
Sbjct: 108 LEFVVGQHRI 117


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 34  IYMTEGSNTF 5
           IY TEG N F
Sbjct: 263 IYKTEGGNAF 272


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 34  IYMTEGSNTF 5
           IY TEG N F
Sbjct: 263 IYKTEGGNAF 272


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 84 SIYSTYSDWNI 52
          SIYS  SDW +
Sbjct: 34 SIYSGGSDWRV 44


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 62  TGIYNWTEQNLYDRR 18
           T +  W E  L DRR
Sbjct: 323 TSLACWNENRLLDRR 337


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 68  TVTGIYNWTEQNL 30
           TVTG Y  TE  L
Sbjct: 100 TVTGTYQLTETEL 112


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 68 TVTGIYNWTEQN 33
          T TG+ NW   N
Sbjct: 9  TTTGLENWRVNN 20


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 77  IQHTVTGIYNWTEQNLYD 24
           I+H +  + NW  +N+ D
Sbjct: 499 IEHWMPLLPNWILENILD 516


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 51  IYSSHCMLNK 80
           IY++HC L++
Sbjct: 124 IYANHCELHR 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,398
Number of Sequences: 438
Number of extensions: 297
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)