Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12n13
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.30 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 EIKNIYRNTLIKMRSSGYEQNTTEYRXSI 591
           E+  IY +T  K+  + +EQNTT+    I
Sbjct: 546 ELDQIYADTHAKLVQAAFEQNTTDQSMDI 574


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 253 NYTLPKPKKVDV 288
           NYT+PK K V+V
Sbjct: 375 NYTIPKEKHVEV 386


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 385 IFTEKNLAVNNLMIWIFHKVQSI 453
           +FT   L  N L+IWIF   +S+
Sbjct: 57  LFTFLALLGNGLVIWIFCAAKSL 79


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 253 NYTLPKPKKVDV 288
           NYT+PK K V+V
Sbjct: 375 NYTIPKEKHVEV 386


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 122 LNAIYITIIASYIQVIAL 69
           +N  Y+ +  S +QVIAL
Sbjct: 215 INCTYVALYPSSVQVIAL 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,176
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)