Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12n12
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    36   3e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   3e-04
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 483 NEVFEPCFGGCAEVSCDNPRSHLRP-CYPYCEPGCVCEEPYIRDDRTHQCVLPQDC 647
           NE+F  C G C    C N     +P C   C PGCVC   Y+R ++   CV    C
Sbjct: 40  NEIFSRCDGRCQRF-CPNVVP--KPLCIKICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 483 NEVFEPCFGGCAEVSCDNPRSHLRP-CYPYCEPGCVCEEPYIRDDRTHQCVLPQDC 647
           NE+F  C G C    C N     +P C   C PGCVC   Y+R ++   CV    C
Sbjct: 40  NEIFSRCDGRCQRF-CPNVVP--KPLCIKICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 582 SQARSTGNKDVSGCGGCHTILPHN 511
           S   S  ++ + GC G HT   HN
Sbjct: 392 SSPDSARHQRIGGCNGLHTTTAHN 415


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 PTDLPRSALGDHLLFCYLRHTEHSLSSVVHIKF 251
           PT L    +  +LLF ++ +T   L +V+ I +
Sbjct: 288 PTSLVLPLIAKYLLFTFIMNTVSILVTVIIINW 320


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 19  ITNNAR*EKTSLAKLKARRTIVFADSNLEDLAYPPEYIGPTSPRD 153
           + N+ +   T L  +   R  VFA++ +  LA   EY+  T   D
Sbjct: 371 VFNDTKITITGLNAVTTYRFQVFAENGVSALAGKSEYVDITVTTD 415


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 438 NGRDEDKIVKACYWPNEVFEPC 503
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 438 NGRDEDKIVKACYWPNEVFEPC 503
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 438 NGRDEDKIVKACYWPNEVFEPC 503
           N    DKI++ C W     E C
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,519
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)