Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12m23
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    31   0.74 
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    30   1.3  
02_05_0813 - 31951168-31951722                                         29   3.0  
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074...    27   6.9  
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300...    27   6.9  
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    27   9.1  

>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 VLSETGTNCNIASVSETMSDINQTKLDTLEKKAV 250
           ++ ETG NCNI+   E ++    T L +L  KAV
Sbjct: 240 LMEETGANCNISDNGEPVNKRKATDLKSLGNKAV 273


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 429 LWIWCYNNWIIWKRCQISXISSTYCFTSLCD 521
           LWIW  + + +W  C +    + YC  S  D
Sbjct: 226 LWIWPSSRYHVWSNCNLMGKLAQYCVASEMD 256


>02_05_0813 - 31951168-31951722
          Length = 184

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -1

Query: 495 SMISLIFGNASKLSNCCSTKSKAGT--SVITLSNSSMSLMPLF----IKAGGKGRRQLS 337
           S+ S++ G   + S+CCS+ S+A +  S    S SS      F    + AGG+G  +LS
Sbjct: 52  SLPSVVRGEEEEASSCCSSSSEASSDASSSAASGSSSPWAARFHREMVAAGGRGGGRLS 110


>11_06_0272 +
           21806681-21806908,21806991-21807233,21807318-21807444,
           21807822-21808036
          Length = 270

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 161 TGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYE 340
           +G N  +A+  E +   +    + LE  A    + LE+D      +W L  ++AFS R  
Sbjct: 80  SGLNRGLAASQEDLDRADAAARE-LEAAAGGGPVDLERDVDKLQGRWRLVYSSAFSSRTL 138

Query: 341 SCLRPFPP 364
              RP PP
Sbjct: 139 GGSRPGPP 146


>02_03_0298 -
           17428616-17428738,17428822-17428992,17429913-17430014,
           17431654-17431764,17432142-17432228,17432551-17432588,
           17432830-17432833,17433280-17433419,17434189-17434320,
           17435289-17435354,17435966-17436013,17436055-17436160
          Length = 375

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 LSETGTNCNIASVSETMSDINQTKLDTLEKKAV 250
           + ETG N NI+   E +S    T+L +L  KAV
Sbjct: 232 MEETGANRNISDNGEPVSKRKATELKSLGNKAV 264


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 320 AFSFRYESCLRPFPPAFMKSGIKDMDELLXVITDVPALDLVLQQLDNLEAL 472
           +F FR  S LRP  P  +   IKD  + L       AL+ V + L +L  +
Sbjct: 2   SFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGARALEEVEKNLSSLRQM 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,333
Number of Sequences: 37544
Number of extensions: 222158
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)