Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12m17
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   3.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 144 TSIGFLFMWRHFIINNSSNETQFTEMFS 61
           T++GFL  W++     + NE  F+ + +
Sbjct: 7   TALGFLLFWQNSASLENDNEFGFSYLLN 34


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 243 CRRSASCIFEKRPK 284
           CR   SCI +KR +
Sbjct: 146 CREEKSCIIDKRQR 159


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 243 CRRSASCIFEKRPK 284
           CR   SCI +KR +
Sbjct: 146 CREEKSCIIDKRQR 159


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 160 IPNFVTRMLATIAYWLPPAII 222
           IP+ +  +++ IA+W+ P  I
Sbjct: 222 IPSALIVVMSWIAFWIKPEAI 242


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 241 YVEEAHHASLRK 276
           Y+ E H ASLRK
Sbjct: 300 YLNEVHTASLRK 311


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 241 YVEEAHHASLRK 276
           Y+ E H ASLRK
Sbjct: 338 YLNEVHTASLRK 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,036
Number of Sequences: 438
Number of extensions: 2069
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)