Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12m11
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 48  FSNKTKEQDGNND 86
           F+NK K+ D NND
Sbjct: 103 FNNKNKDGDDNND 115


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 439 KEKIKALKESIDTKLNKLKDQENEKVELMMEWLNHRLLEVS 561
           K+K+  +  S+D  L   K + N+KV +  E    ++++++
Sbjct: 240 KKKVNYVYRSVDQVLEDGKLKPNKKVRISNEMSKVKVIDMT 280


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 296 NIFQLN*HLRNKLN 337
           NIFQL  H+R+ +N
Sbjct: 170 NIFQLKQHMRDTMN 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.130    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,892
Number of Sequences: 438
Number of extensions: 2118
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)