Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12m08
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    36   0.004
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    34   0.018
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   6.3  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   8.3  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +3

Query: 261 ILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN 440
           I+F+ W   N  +   S +AI + G L+E L+ +     T             +   G  
Sbjct: 27  IVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTSLKETE----------FQRGYAGQQ 76

Query: 441 SPCAGTAVVKYSMLSGGHIIQTC-LHFIQSTASYMLMLIFMTYNVWL 578
           S   G        L  G   + C L+ +Q   SY LML+ MTYN ++
Sbjct: 77  SE--GLLTHHSKSLKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAYV 121


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 492 HIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFFG 626
           H +++C + +Q   +Y+ ML+ M YN ++           YF FG
Sbjct: 205 HFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 472 YLTTAVPAHGLLVPHSLLVILTLESLADEARVCSASL*YFKPSYST 335
           +L ++V +   L   S+L    + S +    V S+SL  F PSYST
Sbjct: 228 FLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYST 273


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 226 MLWCSIPACAPKYCSKDGRLPTPWSC 303
           +L    P CAP +   DG  P P  C
Sbjct: 22  LLTSRTPLCAPLFSHLDGMTPCPIDC 47


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 527 DRLVHADVNLHDLQRVA-VSGPCPWSGGRLLFLRMEEEH 640
           D ++HA+ ++H +   A +S P P S GR     +EE H
Sbjct: 292 DEILHANSSVHSVATEATISNPRP-SSGRFQQTPIEEHH 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,961
Number of Sequences: 5004
Number of extensions: 53314
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)