Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12m06
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.4  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   4.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   4.2  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   5.6  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.7  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    25   9.7  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   9.7  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   9.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   9.7  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 275 PTEISGR*TESHE*KVDSQHRPQP--KTTIEEFNENRGSIPN*KWNFQDLEQTILDTQT 445
           P++ +    E  E    S+H+PQP  KTT +       S P  K N  D+ +T L  QT
Sbjct: 583 PSQTANNVHEIREPSFSSEHKPQPSLKTTTDV------SSPETKQNIADIRKTTLTDQT 635


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 213  VMSISAYKYR-QNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEAS 389
            +M I   +YR Q  + D  H    K++ D+ N+MS +   N   +Q  Q   S    E  
Sbjct: 926  IMEIGGIRYRIQKSKVDDLHEQ-LKFVKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYD 984

Query: 390  RT 395
             T
Sbjct: 985  TT 986


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 507 TLRSAPGTPPCLPESRPFEQIVCVS 433
           T  SAP  PP +P SRP E++  +S
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLS 249


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 303 NRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHR 443
           N    RS     H QRLQ   ST +E   R ++ T K  N P  + +
Sbjct: 742 NATHARSTSQVSHTQRLQQSISTSLE---RVKSNTKKESNSPRQVSK 785


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 240 RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRT-ENGTFKI 416
           R+N++  S      + L DE  ++SER          LQ R  T  EE ++  E+ T K 
Sbjct: 588 RENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKT 647

Query: 417 LN 422
            N
Sbjct: 648 SN 649


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 240 RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASR 392
           R +D  D    + +  L+  P+R S     + DH  R +SRS       SR
Sbjct: 163 RFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRPGRSRSR 213


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 294 DEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKIL-NKPFS 434
           D P+  +  S +NT  +Q L  RSS+      R +NGT     N PFS
Sbjct: 88  DSPSTQNVGSTNNTRASQSLLRRSSSFFRRRHR-KNGTHASTDNNPFS 134


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 591 EQVEKIVAKLGEKTEFQFDK 650
           E++EK+   + EKTE  FDK
Sbjct: 483 EEIEKLALLIKEKTEIVFDK 502


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 439 CIENGLFKILKVPFSVRDASSIFVELLDCSLWLWSV 332
           C E+  F +  + F  +D        LDC L LWS+
Sbjct: 345 CFEHSDF-VTSIAFHPKDDRFFLSGSLDCKLRLWSI 379


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 567 DKIPNYPREQVEKIVAKLGEKTEFQFDK 650
           D  PN+ R +V+ +VA+L    E  +DK
Sbjct: 512 DPTPNFDRSKVKGLVAQLLTLNEENYDK 539


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 306 RMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRF 449
           R S    +  +   RLQ RSS+ IE+    E+G   +LN+    +  F
Sbjct: 44  RASRNQDNRPERQSRLQ-RSSSLIEQVRGNEDGENDVLNQTRETNSNF 90


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 149 FTYSVVVF*NGTDTRFHLLVFRNVNI 226
           FT++VV + +  + R+ ++VFRN  I
Sbjct: 37  FTWNVVQYLSNLEKRYPIMVFRNDEI 62


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/81 (20%), Positives = 37/81 (45%)
 Frame = +3

Query: 171 FEMARIHGFIFLFSVMSISAYKYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQR 350
           FE+  IH F     V + S+Y+   ++Q D   S     ++D     S+  + N   N++
Sbjct: 233 FEVPTIHVFTSTTQVHTESSYETSSSEQSDD-SSSSSSCISDSEESSSDDEL-NELSNEK 290

Query: 351 LQSRSSTKIEEASRTENGTFK 413
             +  +  ++ +S+  +  F+
Sbjct: 291 KANSPTQNVDTSSKLSSVKFQ 311


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 225 SAYKYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIE--EASRTE 398
           S+Y+ RQ+  Q    +   +   D P+  +    HN+ ++ R+ S +ST+     AS   
Sbjct: 33  SSYRSRQSYHQ---RTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDT 89

Query: 399 NGTFKILNKPFS 434
           N     +N P S
Sbjct: 90  NVELPKINLPDS 101


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 167 LQHYT*NNVWRLTYARAGHTINAFRLVHINYMLYDVG 57
           ++H T  N+WRL Y+ + H+ N+  +V  + M  +VG
Sbjct: 222 VEHQTPENLWRLPYS-SFHSKNSHLVVLTHGMHSNVG 257


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 420 NKPFSIHRRFAQTDDSPGDRVVFPGLTSRSGVNPYVPEIPES 545
           NKP+++     +TD+   DR++   L+ R  VNP +   PE+
Sbjct: 349 NKPYAL-----RTDEVDNDRILPSVLSPRDRVNPVMKIGPET 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,317
Number of Sequences: 5004
Number of extensions: 67369
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)