Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12m06
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 33 0.20
03_05_0786 + 27691451-27691688,27692376-27692479,27692600-276926... 31 1.1
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 31 1.1
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 30 1.4
09_01_0077 - 1116676-1116972,1119124-1119246,1119515-1119877,112... 29 3.3
08_02_1325 - 26146775-26147247,26147397-26148579 29 4.4
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409... 28 5.8
02_01_0745 - 5550472-5551053 28 5.8
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 28 7.6
03_02_0220 - 6531255-6532667 28 7.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 28 7.6
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 225 SAYKYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTE 398
S ++ Q+ Q PH H +Y+ +P +++ HN+ H Q L+ R+ E A +E
Sbjct: 29 SQHQQHQHQHQQPPHPHHHQYVQRQPQ--PQQTPHNSQHQQWLR-RNQIAAEAAGASE 83
>03_05_0786 +
27691451-27691688,27692376-27692479,27692600-27692671,
27693231-27693404,27693603-27693726,27695154-27695200,
27695381-27695593
Length = 323
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 387 MLPRFSLNSSIVVFGCGLCCESTFHS--CDSVHLPDISVGDCE 265
M+ R + +V+ C LC E + C S HL DIS DCE
Sbjct: 253 MVNRCIIEKVALVYECDLCVEKYSDNLRCASKHLKDISGMDCE 295
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 519 PYVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 662
P +P + E C + G+ +P YP ++ K + K+G+ ++ DLP
Sbjct: 239 PRIPALVELCIQAGV--NLPEYPTKRRRKPIIKIGKNEFVDANEDDLP 284
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 225 ILTLRKTRR*NRVSVPFQNTTTLY--VKQRLATDLRSRRSHNKC 100
++TLRK +R NRV++ Y ++ +L +R +R+ N C
Sbjct: 97 VITLRKEKRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNC 140
>09_01_0077 -
1116676-1116972,1119124-1119246,1119515-1119877,
1120639-1120680
Length = 274
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 234 KYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEA 386
K Q D Q PH HPQ+ L + P + ++S+ + + + + + ++E+A
Sbjct: 161 KQEQEDHQQQPHPHPQQ-LEEAP--LEDKSMSIIEVHNVMPAETEQQVEDA 208
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 316 KGRFTTQTTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTLR 471
K R + K+ +R + S+KH K + R + RYT+ L++ TLR
Sbjct: 26 KERRGRERKEKNSDRRKDKHSKKHKREKHKDKRKNKDDDRYTNQTLEKATLR 77
>02_04_0151 -
20240418-20240438,20240608-20240775,20240855-20240962,
20241519-20241605,20241687-20241728,20241875-20241937,
20242007-20242069,20242129-20242497,20242577-20242669,
20242746-20242838,20242942-20243145,20243305-20243549,
20243649-20243808
Length = 571
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Frame = +3
Query: 216 MSISAYKYRQNDQQDSP------------HSHPQKYLADEPNRMSERSIHNTDHNQRLQS 359
+S S KY + Q+ P HS Q+ +A E +M +S N H+Q +QS
Sbjct: 438 LSFSTEKYHNDANQEEPHYQEAPPSPWSAHSFRQEEMAKEGQKMFVKSTDNA-HDQVIQS 496
Query: 360 RSSTKIEEASRTENGTFKIL 419
R +K S E G+ +L
Sbjct: 497 RVRSKKTRPSPMEVGSTVLL 516
>02_01_0745 - 5550472-5551053
Length = 193
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 516 NPYVPEIPESCKKIGICDKIPNYPREQVEKIVAKL 620
+PY P P S K + + D+I P E++++I L
Sbjct: 49 DPYGPMSPPSQKVVDLADRIAALPPEEIKQIAPAL 83
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 531 EIPESCKKIGICDKIPNYPREQV 599
E+ ++C +I ICD +PN+ E +
Sbjct: 434 EVEDACAEICICDWLPNWRNENI 456
>03_02_0220 - 6531255-6532667
Length = 470
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 465 SPGDRVVFPGLTSRSGVNPYVPEIPESCKKIGICDKIPNYPREQVEKI 608
SPGD G+ S GV+P VP + S K+ R+ +EK+
Sbjct: 167 SPGDVCAVLGIMSACGVSPSVPLVVTSVHKLATAGDFVG-ARQLIEKM 213
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 541 SGISGTYGFTPDLEVSPGNTTLSPGESSV*ANRLCIENGLFKILKVPFS 395
SG SG YG P ++ P ++ S NR+ +++ + K+ + FS
Sbjct: 489 SGGSGNYGRLPTAQILPQAVPINSSPSGSSGNRVPVDDVVEKVATMGFS 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,324,815
Number of Sequences: 37544
Number of extensions: 428695
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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