Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12l23
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 308 ENYTAIDFGNKLQHY 352
           +N T IDFG  +QHY
Sbjct: 57  KNATKIDFGLSIQHY 71


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 518 RVQTGTDQTDAVLEMPIRDPIPP 450
           RVQ  TD T+     P  DP PP
Sbjct: 646 RVQNATDTTNFDEYPPDSDPPPP 668


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 263 HVACQFPNAGPGSSCENYT 319
           H  C++PNA      +NYT
Sbjct: 433 HFQCRYPNASVTPYNKNYT 451


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 537 SVTHTLDSQWGRCVGV 584
           S THTLD  W R V +
Sbjct: 497 SSTHTLDVAWRRKVTI 512


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 537 SVTHTLDSQWGRCVGV 584
           S THTLD  W R V +
Sbjct: 535 SSTHTLDVAWRRKVTI 550


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 191 ALTRSPRGK*TLSDICIKLK 132
           A  R P G+ T +DIC  LK
Sbjct: 665 ATARLPNGEGTRADICQLLK 684


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 462 SHSTNIMSSGFGSKI 418
           SHS+N + +GFG  I
Sbjct: 78  SHSSNGIHTGFGGSI 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,332
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)