Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12l21
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    32   0.059
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    28   0.95 
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   2.9  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   2.9  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   6.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 219 TSITLNDRFTLLSTAGTDRAAMRMKKTSYR--TSIPYTNPEHKKPFLD*PDR 368
           TS   ++R  LLS++      +R  K S+R  TS   +  +HK+PF + P+R
Sbjct: 183 TSPAFSERLKLLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKRPFTNVPER 234


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 295 KRPTVHQYLTQTLNIRNRFLIDQIARKLEYQMKRATLRQRLG 420
           K  T++  +T+TLN+RN  LI  IA +   Q+ + T+ + LG
Sbjct: 43  KDHTINANITKTLNVRNEKLIAGIASQ---QVGKLTITKALG 81


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 120 KLASPKIFVYRILVCSYRGEANMVIEKLHGLQATSITLNDRFTL----LSTAGTDRAAMR 287
           +L   ++  Y I+V S     N+ IEKL  +  +S  L + +TL    L+ + T+  A R
Sbjct: 86  ELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQLKEDYTLDNFRLAASTTEHTARR 145


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 244 NLSFRVILVACRPCNFSITIFASPR*LQTKIL 149
           N  + +I +A  PCNFS ++F   + ++  +L
Sbjct: 39  NRLYEIISIALNPCNFSKSLFWLRKKIKNSVL 70


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 478 SSSSGRCSDYRTDGMVLDPVQAVDVMSPASSDT 380
           SSSS   S+Y +  + +  V + D   P+SS T
Sbjct: 81  SSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQT 113


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 99   KKCSLIAKLASPKIFVYRILVCSYRGEAN 185
            +KCS+     SP+   YR   C  R E N
Sbjct: 1685 EKCSIYPLAFSPRFTYYRHTKCHRRNEKN 1713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,541
Number of Sequences: 5004
Number of extensions: 40991
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)