Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12l21
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 DRSKAGVSDEAGDITSTAWTGSSTIPS 443
           D SKAG +D +   T T    ++T+P+
Sbjct: 204 DESKAGSTDASTPATVTTTGATTTLPA 230


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 126  LTSQLMSISWLS 91
            LTSQ + ISW+S
Sbjct: 1093 LTSQTIRISWMS 1104


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +3

Query: 360 PDRSKAGVSDEAGDITSTAWTGSSTIPSVR*SEHLPELDEVKQHQ*PQQQ 509
           P  S+  +     + ++T W  +S I +   +    +  + +Q Q  QQQ
Sbjct: 762 PQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQ 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,940
Number of Sequences: 438
Number of extensions: 2594
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)