Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12l13
(458 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 1.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 6.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 8.5
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 341 GISQRNYMTVSLDYKP 294
GIS RNYM ++D P
Sbjct: 520 GISPRNYMYPNIDISP 535
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 184 LFIPTILLHVLCKIELYI 131
L +PT+L+ LC + Y+
Sbjct: 240 LILPTVLISFLCVLVFYL 257
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 166 SCLYVPPGIFKSTCKIDI 183
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 166 SCLYVPPGIFKSTCKIDI 183
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFGSTCKIDI 115
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CK+++
Sbjct: 98 SCLYVPPGIFKSTCKMDI 115
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 6.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
+CL++P + CKI++
Sbjct: 135 TCLYVPPGIFKSTCKIDI 152
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -2
Query: 190 SCLFIPTILLHVLCKIEL 137
SCL++P + CK+++
Sbjct: 98 SCLYVPPGIFKSTCKMDV 115
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.6 bits (41), Expect = 8.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 266 TEATRLCRQLVYNLEKQSYSFSVKCPGPSQRQS 364
T T CR+ YN+ + + K PS + S
Sbjct: 95 TSVTPSCRRQRYNIAAANPLLAEKLAAPSSQAS 127
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,361
Number of Sequences: 438
Number of extensions: 2386
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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