Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12l06
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   2.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   2.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   2.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   5.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    19   6.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    19   6.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 2   SLKNIS----KASIISGDCENTPPHSHRD 76
           ++KNIS    +   ++GD +N PP    D
Sbjct: 311 NVKNISVKELRRGYVAGDSKNQPPRGAAD 339


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 2   SLKNIS----KASIISGDCENTPPHSHRD 76
           ++KNIS    +   ++GD +N PP    D
Sbjct: 22  NVKNISVKELRRGYVAGDSKNQPPRGAAD 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 2   SLKNIS----KASIISGDCENTPPHSHRD 76
           ++KN+S    +   ++GD +N PP    D
Sbjct: 311 NVKNVSVKELRRGYVAGDSKNNPPKGAAD 339


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 220 FNIYWN 203
           FN+YWN
Sbjct: 43  FNVYWN 48


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 88  FIPSITM*VWWCIFTVTTNDGC 23
           +IP +   V  C   VT+ +GC
Sbjct: 104 YIPRVESVVETCKKEVTSTEGC 125


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 88  FIPSITM*VWWCIFTVTTNDGC 23
           +IP +   V  C   VT+ +GC
Sbjct: 78  YIPRVESVVETCKKEVTSTEGC 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 158 YTNSEYGLYLFNN 196
           Y N+ Y  Y +NN
Sbjct: 96  YNNNNYNNYNYNN 108


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 97  TAIFIPSITM*VWWCIFTVTTNDGC 23
           T +  PSIT+ V   I  V +  GC
Sbjct: 46  TGLAFPSITLIVLGSIIFVISFFGC 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,407
Number of Sequences: 438
Number of extensions: 1266
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)