Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12l03
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 89 6e-19
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 78 9e-16
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 48 1e-06
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 33 0.043
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 28 0.93
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.6
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 88.6 bits (210), Expect = 6e-19
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Frame = +3
Query: 177 LAASRRIVGAVVRTPCTRAHM-SERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK 353
L + + + TP T+ + SE G+ +Y K+E L SFK RG N + SL +
Sbjct: 101 LTLTSNVYEVIKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAHNKMASLDKQSL 160
Query: 354 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAA 533
KNGVIA S GNH ++Y + LG+ +V+P +T K ++LGA V HG + A
Sbjct: 161 KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIA 220
Query: 534 KLHAMSLGKEKKMIYIN 584
K L KE+ + I+
Sbjct: 221 KAECARLAKEQNLEVIH 237
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 78.2 bits (184), Expect = 9e-16
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = +3
Query: 165 YDDILAASRRIVGAVVRTPC-TRAHMSERLGMDIYFKQEFLQYTGSFKERGVRNALISLS 341
YDD+ +AS RI +TP T + +++ +++FK E Q G+FK RG NAL L+
Sbjct: 10 YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 342 DEQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKH 512
+ Q+K GV+ S+GNH A++ + LGIP +++P+ KV + G +V +
Sbjct: 70 EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMY 126
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 47.6 bits (108), Expect = 1e-06
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 VGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK--KNGVI 368
+GA+ RTP R + +S G +I K EF GS K+R + + K + G I
Sbjct: 18 IGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI 77
Query: 369 AAST-GNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 503
T GN G L++ + G C++ +P + K++ + LGA+V
Sbjct: 78 VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEV 123
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 32.7 bits (71), Expect = 0.043
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = +3
Query: 195 IVGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQ------K 353
+ G + T R +S+ G DI K EFL S K+R V +I ++E +
Sbjct: 46 VEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDR-VALQMIRTAEENGDLVPYQ 104
Query: 354 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 503
N V + G+ G +++ LG + +P + K + E LGA V
Sbjct: 105 SNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHV 154
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 186 SRRIVGAVVRTPCTRAHMSERLGMDIYFKQEFLQYTGSFKE-RGVRNALIS 335
+R I G V+R + + ++ D +FK +F + G F++ R V LIS
Sbjct: 265 NRAIEGFVIRCHSDHSSLEQQSSNDFFFKYKFPEPYGMFRQWREVTKMLIS 315
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 556 PKLIACNLAADMSIPCLKTFAPSCSHLLTLL 464
PK +C+L+ D+ L+T PSC LL
Sbjct: 318 PKNSSCSLSVDVKATLLETTPPSCEVSYNLL 348
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 141 PNNPRKIKYDDILAASRRIVGAVVRTPCTRAHMSERLG 254
P+ P + K+D I ++I+ + +RT C + E G
Sbjct: 224 PSVPGEYKFDSIKPLLQKIILSSIRTKCEVVTLDEHEG 261
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 439 WSYLFIPLSTKLTNANSSERKFSS 510
WS +P+ST T+A SS F+S
Sbjct: 126 WSNTSVPVSTPETSATSSSEFFTS 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,900
Number of Sequences: 5004
Number of extensions: 55814
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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