Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k23
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    71   1e-13
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   9.4  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 33/88 (37%), Positives = 53/88 (60%)
 Frame = +3

Query: 198 VLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQ 377
           V ++++G+N  ED + GY      Q++ VC+ +  +  LSNGF  +G SQG  F+RA+ Q
Sbjct: 58  VYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQ 117

Query: 378 RCGHKLPQIKNMVSLGGQHQGIYGIPHC 461
            C     +I+++++LG  H GI  IP C
Sbjct: 118 TC--DAAKIRSLITLGSPHSGINTIPGC 143


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 22  LHYIVLL*FNVLFYCYYNYLKIHASINHHRHAANVTH 132
           +HYI    FN L Y  Y   +I  S NH+   ++++H
Sbjct: 282 VHYIR---FNTLLYYRYQLQEILLSYNHYPQESDMSH 315


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 525 CYMQRN*VASSHHHMFRVSRHHNEVCHRCLGADLRETPC 409
           C+   N   S  +H F     H   C RCL A   E PC
Sbjct: 585 CFRPCNKKLSCGNH-FCQHMCHRGPCPRCLEASFEELPC 622


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 379  DVVINYHKLKTWCL 420
            ++  NYH LK WCL
Sbjct: 1342 NISYNYHVLKDWCL 1355


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 286 HTYSTWRFGFMK-YPFSKSSTVLLPIWRDR 200
           HT+S WR  FM  +PF  S  V   I  DR
Sbjct: 290 HTFSEWRALFMHFFPFINSEGVDPAILSDR 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,239
Number of Sequences: 5004
Number of extensions: 57708
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)