Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k23
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.83 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 88  HASINHHRHAANVTHAACPLVL 153
           HA+  HH+H+  + H++ P  +
Sbjct: 436 HAATPHHQHSTPLAHSSYPAAI 457


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -1

Query: 175 SRNILKEPRLKDMQHVSH*QHXXXX*WMRGFSNNYNSNKTIH*IKVKQYSVVKFD 11
           SRN  +  R K+ + +S+              NNYN+N   +  K++ Y+++  +
Sbjct: 67  SRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIE 121


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  NNYNSNKTIH*IKVKQYSVVKFD 11
           NNYN+N   +  K++ Y+++  +
Sbjct: 95  NNYNNNYNTNYKKLQYYNIINIE 117


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 584 FLFFQAKTNGLDFD 625
           F F +  TN LDFD
Sbjct: 15  FFFIEGMTNVLDFD 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,551
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)