Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12k14
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 36 0.007
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 30 0.27
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 30 0.35
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.3
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 7.6
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 10.0
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +1
Query: 328 VEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYAT 507
V I+ E+ Y++++KP + ++ NTV + + + L+ RLD T
Sbjct: 105 VGIVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMK-----ENKCSLLYPCNRLDRLT 159
Query: 508 SGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRG 612
SG++ +KS AA + +K Y+A V G
Sbjct: 160 SGLMFFSKSPKAAEEMRVHMISKSLKKEYVARVIG 194
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 205 LNTIKLRCFSLLDK*IREKSSKMNAPNFNFRGFRMS 312
L I RCFS+L+K IR+K+++ +A F ++
Sbjct: 241 LKNILSRCFSILNKNIRQKNTENDAAGFTINDLNLA 276
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 29.9 bits (64), Expect = 0.35
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 85 LEEVICVYLD--RALQTTIQLFLSHYCPRISNYLLQVPSLRKLNTI 216
L++V YL + T + LS Y P +++YLL+V ++ K N+I
Sbjct: 42 LKDVAVKYLQFCQFQPTLLDKLLSKYVPNLASYLLKVKNIGKCNSI 87
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 138 IIPIALLSTDIQLFTSSAVSKKIKYNKTQM 227
I+ AL QLFT V KK K NK+Q+
Sbjct: 144 ILDRALCDQSNQLFTDYTVKKKSKKNKSQL 173
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 64 YPVDKMPLEEVICVYLDRALQTTIQLFLS 150
YPV+ M ++ YLD AL T +Q+ LS
Sbjct: 688 YPVEIMYTKQPEADYLDAALMTVMQIHLS 716
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 78 FVHWISYFYYFYSHNKSTH 22
F +W +F++F+SH + H
Sbjct: 74 FFYWFFFFFFFFSHCRRFH 92
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 290 IFAGSECQQRTWLWKFYL 343
I G+ CQ+ TW W F++
Sbjct: 238 IIGGAICQRTTWRWIFFI 255
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = -1
Query: 598 PGSISWSISFRTLCQRWPQLADSWPC----RARHSWRSP 494
PG ++W++ +CQ +P S R H W P
Sbjct: 230 PGGVAWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWP 268
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 536 GQLRPALAKRSKRD*PGNTTWRSSADMVGFELADVDYG 649
GQ A K+ R NTT +S+ +V F D D+G
Sbjct: 26 GQRIKAPNKKKNRKASKNTTKKSTVSVVNFLEQDTDFG 63
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 376 YDMYINSD-DENEKNTVAYQIARCDSHLSTSSQP 474
YD YINSD +N+ + + A DS ++++ P
Sbjct: 580 YDKYINSDFTKNKDKYIKFTKADLDSFITSAFAP 613
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,956
Number of Sequences: 5004
Number of extensions: 61792
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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