Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k12
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   1.8  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   1.8  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   1.8  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.4  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   7.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 29  IKLNPFGGNLSPRKKERLFETIIEETGTNW 118
           +K+ P  G+L P +++R+FE   E+T + +
Sbjct: 321 LKVYPLYGSLPPNQQQRIFEPTPEDTKSGY 350


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 44  FGGNLSPRKKERLFETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVKKILEIY 223
           FG    P  K +     +      W+ L   LK++  V   +D+    +   +KKI++  
Sbjct: 27  FGALFKPVYKGKKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQAN 86

Query: 224 EQ-RADPQRWFFV 259
           E+  +D + WF++
Sbjct: 87  EKVTSDVEPWFYL 99


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 35  LNPFGGNLSPRKKERLFETIIEETGTNWRALARKL 139
           L+P   N     + +   T++E+ GT W ++A KL
Sbjct: 322 LDPKDRNAWEESELKKLYTLVEQEGTRWNSIANKL 356


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 333 FKKKYPSNHFSNISAY*ECLHNFN*RSY*IK*SLHIEKNPNPLVRIDINNSSKK 494
           F++K P     +  A+ E LH+   RSY    SL  EK+   + + ++ N S++
Sbjct: 311 FEEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDTLITKSELANESEE 364


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  NLSPRKKERLFETIIEETGTNWRALARKLKIRECV 157
           NL+P   + + + +I   G N R LAR + + E V
Sbjct: 29  NLAPAVVDNVKDDLIVSKGGNSRELARNVPVNEMV 63


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 331 YLKRSTHQITSAIFQLIRNVYTISIEEVIESSNPFISKKIQIL 459
           Y   S  +   AIFQ   N+   +I ++    NPFI + ++ L
Sbjct: 294 YYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSL 336


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 44  FGGNLSPRKKERLFETIIEETGTNWRALARKL 139
           FGGNLS +    +   I E   ++WR ++  L
Sbjct: 873 FGGNLSEQSSGCVGFCIFEYNSSSWRNISHNL 904


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 257 VLCDALEESYRRDIADSLR 313
           V C+ LE+ +  DI DSLR
Sbjct: 494 VACEELEQGFDLDILDSLR 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,169
Number of Sequences: 5004
Number of extensions: 31858
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)