Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k12
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480...    30   1.0  
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248...    29   3.1  
01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209     29   3.1  
11_06_0347 + 22555087-22555943,22556638-22558783                       28   4.1  
11_06_0337 - 22454281-22456399,22458520-22459388                       28   4.1  
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563...    27   7.2  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     27   9.5  
08_02_1515 + 27637966-27638679                                         27   9.5  

>03_05_0502 +
           24947444-24947665,24947768-24947823,24947929-24948099,
           24948508-24948631,24949086-24949142,24949216-24949312,
           24949619-24949826,24950637-24950697,24950793-24950846
          Length = 349

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 185 TLADKVKKILEIYEQRADPQRWFFV-LCDALEESYRRDIADSLRNIIVMN 331
           T  D V K+ E  E+R  P   F   L D +EE +R+ +  S +NI V++
Sbjct: 178 TFRDGVVKLFEFLEERDIPVLVFSAGLADIIEEVFRQKLHRSFKNIKVVS 227


>04_03_0532 -
           16824394-16824447,16824545-16824665,16824748-16824875,
           16825457-16825603,16825682-16825807,16825895-16826160,
           16826259-16826453,16826577-16826657,16826756-16826830,
           16827270-16827530,16827633-16827719,16827844-16828060
          Length = 585

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +2

Query: 65  RKKERLFETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVKKILEIYEQRADPQ 244
           R+ E+L   ++E   TN +AL R+    +  I   D E   L   VKK LEI     D +
Sbjct: 477 REAEKLCTKVLELESTNVKALYRRT---QAYIELADLELAEL--DVKKALEIDPDNRDVK 531

Query: 245 RWFFVLCDALEESYRRD 295
             +  L + ++E  +RD
Sbjct: 532 MVYKTLKEKIKEYNKRD 548


>01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209
          Length = 321

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 35  LNPFGGNLSPRKKERLFETIIEETG 109
           +  + G++ P +  R++ETI+EETG
Sbjct: 13  ITKYRGDIDPNEYLRVYETIVEETG 37


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 86  ETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVK 205
           E  I   G++W+      K+R   + K D +ET L +++K
Sbjct: 526 ENFITVIGSHWQTPFPSYKVRRLSVHKSDRQETDLVERMK 565


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 86  ETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVK 205
           E  I   G++W+      K+R   + K D +ET L +++K
Sbjct: 530 ENFITVIGSHWQTPFPSYKVRRLSVHKSDRQETELVERMK 569


>01_06_1199 +
           35355690-35355732,35355793-35355930,35356366-35356389,
           35356450-35356587,35356974-35357056,35358881-35358922,
           35359151-35359231,35359319-35359414,35359530-35359736,
           35359810-35359963,35360170-35360373,35361037-35361921,
           35362025-35362071
          Length = 713

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 32  KLNPFGGNLSPRKKERLFETIIEETGTNWRALARKLK 142
           K N FG   S +KK++  ET++ +  TN   L   L+
Sbjct: 302 KCNRFGKENSKKKKQQTEETVVSKRNTNQVILTYSLR 338


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 56  LSPRKKERLFETIIEETGTNWRALARKLKIRECV 157
           L  ++  RL+ ++IEET     A+ARK K++  V
Sbjct: 417 LEKKRSRRLYNSVIEETAGK-LAIARKSKVKALV 449


>08_02_1515 + 27637966-27638679
          Length = 237

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/68 (23%), Positives = 37/68 (54%)
 Frame = +1

Query: 292 RYSRFIKKYYSNEYLKRSTHQITSAIFQLIRNVYTISIEEVIESSNPFISKKIQIL**GL 471
           R ++  +K +     K ++ ++   + +L+     I++  ++ES++ F+SKKI+     L
Sbjct: 128 RLAKKARKQFKKVSKKTASDKMDCRVVKLLAEAREITVS-LLESTSCFLSKKIETPKWSL 186

Query: 472 ISTTAVKN 495
           +S T  K+
Sbjct: 187 VSATFQKS 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,205
Number of Sequences: 37544
Number of extensions: 159057
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)