Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k12
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    30   0.92 
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    30   0.92 
U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin compl...    30   1.2  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    29   2.8  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    27   6.5  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     27   6.5  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     27   6.5  
U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 536 PTQKGSKVLNSIS-VFFTAVVDINPH*RIWIF 444
           PTQK +K+LNS S +F   V+ + PH R+ IF
Sbjct: 75  PTQKNNKILNSESKIFAFVVLLLLPHLRLIIF 106


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 152 CVIIKIDAEETTLADKVKKILEIYEQRADPQRWFFVLCDALEESYRRDIADSL 310
           C  ++I A + + A+ ++ ++EI   +    R+F+V CD+ +E     + DSL
Sbjct: 201 CEDVRIHASKVS-ANDIQTLVEI-AYKGSSLRFFYVRCDSFDEDVTEQLLDSL 251


>U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin complex
           component protein2 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 459 LVRIDINNSSKKYRNRIENLTT 524
           L+ +D++ + KKY+NR+ NLT+
Sbjct: 36  LISVDVDEALKKYKNRVLNLTS 57


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 113 NWRALARKLKIRECVIIKIDAEETTLADKVKKILEIYEQRAD 238
           +W  L     I +C+I++I  + T +    KK+L  +++ A+
Sbjct: 105 SWDTLTNDYLIDDCIIVEITVKITKMTGIPKKVLRSFDKSAE 146


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
 Frame = +1

Query: 292  RYSRFIKKYYSNEYLK------RSTHQIT--SAIFQLIRN 387
            RY+R+ KKYY NE ++      R+ HQ T    +FQ +++
Sbjct: 1961 RYARYTKKYYLNENMRKLESNIRNIHQSTLEGRVFQAVQD 2000


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 128 ARKLKIRECVIIKIDAEET---TLADKVKKILEIYEQRADPQ 244
           A +  IRECV+I +D++E    TLA   +K++ + +    P+
Sbjct: 295 AGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPE 336


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +2

Query: 68  KKERLFETIIEETGTN----------WRALARKL-KIRECVIIKIDAEETTLADKVKKIL 214
           K+E  F TII E+  N          WR++ + L K R C  +  + E   L +K  KI 
Sbjct: 236 KEENEFATIIRESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIR 295

Query: 215 EIYE 226
            +YE
Sbjct: 296 SVYE 299


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +2

Query: 68  KKERLFETIIEETGTN----------WRALARKL-KIRECVIIKIDAEETTLADKVKKIL 214
           K+E  F TII E+  N          WR++ + L K R C  +  + E   L +K  KI 
Sbjct: 234 KEENEFATIIRESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIR 293

Query: 215 EIYE 226
            +YE
Sbjct: 294 SVYE 297


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +2

Query: 83  FETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVKKILEIYEQRADPQRWFFVL 262
           F   + E+      LA  L I  CV  K  + E TL + +K +  I     DPQ +F+ L
Sbjct: 203 FSDFVSESDDVANRLATPLLI--CVERK-KSNEDTLVNMMKSLARIAPLLKDPQSYFWRL 259

Query: 263 CDALEESYRRDIADSLRNII 322
                    R + DSL  ++
Sbjct: 260 PKLFSRMEGRTLRDSLVTMV 279


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +2

Query: 68  KKERLFETIIEETGTN----------WRALARKL-KIRECVIIKIDAEETTLADKVKKIL 214
           K+E  F TII E+  N          WR++ + L K R C  +  + E   L +K  KI 
Sbjct: 234 KEENEFATIIRESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIR 293

Query: 215 EIYE 226
            +YE
Sbjct: 294 SVYE 297


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +2

Query: 68  KKERLFETIIEETGTN----------WRALARKL-KIRECVIIKIDAEETTLADKVKKIL 214
           K+E  F TII E+  N          WR++ + L K R C  +  + E   L +K  KI 
Sbjct: 236 KEENEFATIIRESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIR 295

Query: 215 EIYE 226
            +YE
Sbjct: 296 SVYE 299


>U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical
           protein B0495.5 protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 83  FETIIEETGTNWRALARKLKIRECVIIKIDAEETTLADKVKKILEIYE 226
           F TI+    T W+     LK R   IIK+   ET   D V +  E+++
Sbjct: 150 FPTILNMIHTEWKKEGESLKQRGAQIIKLLQPETASGD-VNRSEEVFK 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,460
Number of Sequences: 27780
Number of extensions: 164876
Number of successful extensions: 464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)