Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k11
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC080195-1|AAH80195.1|  881|Homo sapiens Rho GTPase activating p...    30   9.2  
AL833975-1|CAD38819.1|  414|Homo sapiens hypothetical protein pr...    30   9.2  
AK125358-1|BAC86144.1|  608|Homo sapiens protein ( Homo sapiens ...    30   9.2  

>BC080195-1|AAH80195.1|  881|Homo sapiens Rho GTPase activating
           protein 17 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 421 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 513
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 518 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 549


>AL833975-1|CAD38819.1|  414|Homo sapiens hypothetical protein
           protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 421 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 513
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 51  HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 82


>AK125358-1|BAC86144.1|  608|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43368 fis, clone NT2RP8000483, moderately
           similar to Rattus norvegicus mRNA for Nadrin E2. ).
          Length = 608

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 421 HVTPTFGGALSPGRNSTAMPGG-APPSMASRA 513
           H++P F   L P   ST +P G  PP  +SRA
Sbjct: 245 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRA 276


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,216,835
Number of Sequences: 237096
Number of extensions: 1735476
Number of successful extensions: 3748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3746
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)