Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k10
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    29   0.32 
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.3  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   6.9  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   6.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   6.9  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   6.9  

>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 39  IISQGGIQNNVVPEQFTANFDLRIALNVDLKEFE-NMIQKWCTEAGRGVTYEFEQKDPYT 215
           ++ Q   QN+ +  Q  A  +  I L  DL   + NM   +     +G+ Y F Q +P  
Sbjct: 33  MLQQLSEQNSELEPQNVAP-NAEIPLGFDLSGIQFNMTPDFYLRMNQGMDYAFNQPNPIA 91

Query: 216 TPTQL 230
           TP QL
Sbjct: 92  TPQQL 96


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +3

Query: 39  IISQGGIQNNVVPEQFTANFDLRIAL-NVDLKEFENMIQKWCTEAGRGVTYEFEQKDPYT 215
           ++S G  Q  V   +     ++R  + N+ L+ F    QK   E  +  T+E E K PY 
Sbjct: 217 VVSAGSKQITVERGELEIEREMRARIYNIHLQIF----QKVQLETAKRWTFESEIKRPYF 272

Query: 216 TPTQLDDAN-IYWKAFKQTAEELG 284
              +LD+A  + W+ +    E  G
Sbjct: 273 HVKELDEAQLVNWRKYLDFEEVEG 296


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 QTNRRGTGNVN*ASNVYGRHRQPLS 334
           +T+  GT N+N  +N+ G  +QPLS
Sbjct: 175 RTDYPGTENMNIPTNIDGGSKQPLS 199


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 259 SNKPQRNWECQLSLKRLREAPTAAIFGNLASRRW 360
           SN P  N       K+LR A T+AI     + RW
Sbjct: 95  SNSPTANEALDSDAKKLRSALTSAILVEKPNVRW 128


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 114  LNVDLKEFENMIQKWCTEAGRGVT------YEFEQKDPYTTPTQLDDANIYWKAFKQTAE 275
            L++ L    ++I+K+  EA   +T      Y    KD Y     L  AN++ +AF    +
Sbjct: 862  LHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDKYRVAFALQVANLWTRAF--FCQ 919

Query: 276  ELGMSIKPQT 305
             LG++  PQ+
Sbjct: 920  RLGINELPQS 929


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +3

Query: 6   IYNTVSTNLFHIISQGGIQNNVVPEQFTAN-FDLRIALNVDLKEFENMIQKWCTEAGR-- 176
           I+ T+  ++F  I +  ++ N+       N  D+       + E+ NMI KW ++ GR  
Sbjct: 62  IHRTLPLSVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREG 121

Query: 177 GVTYEFEQKDPYTTPTQLDDANIY 248
            +   +E ++ Y     LD+  ++
Sbjct: 122 SICTFYELQEQYKEVDCLDEVLLH 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,440
Number of Sequences: 5004
Number of extensions: 42566
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)