Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12k05
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.53
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 29 0.70
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 2.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.1
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 3.7
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.7
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 3.7
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 4.9
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 26 4.9
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 4.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.9
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 4.9
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.6
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 192 SSAVVQRPLIKISTRTSLYRYNKTTQRRPDAPEHRSPNPLRVT 320
+SA RPL + T +S+ + TT + D P + +P++V+
Sbjct: 482 TSASPDRPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVS 524
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 323 LCDAERVRRSVFGRIWSSLSRFIVAVKTSSRR---DFNKGSLNYCTR 192
+ +A++ +RS R S S AVK++ R DFN G++N+C R
Sbjct: 118 VAEAQQAKRSNSLRRTHSRSSSYFAVKSTIDRVRGDFNTGNINHCVR 164
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 428 KYKFLIRTD*VTGYRCLTSNVKNNYCDACYFRVPPLC 318
K+ ++ ++ V + K+++ DAC++RV P C
Sbjct: 7 KFNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLPAC 43
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 284 ARTQIAEPSPRHTRGEPENSKRHNNYSSHLR 376
+R++ P+ RH R E E ++ ++ + SH R
Sbjct: 124 SRSRSTSPANRHRRKEKERTRSNHRHGSHRR 154
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 192 SSAVVQRPLIKISTRTSLYRYNKTTQRRPDAPEHRSP 302
SS++VQ PL T + YN TT +P +P
Sbjct: 333 SSSIVQNPLQPARTGPAAINYNYTTNYSVSSPSVTNP 369
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 219 IKISTRTSLYRYNKTTQRRPDAPEHRSPN 305
+K+S R YR + +RP H SPN
Sbjct: 100 LKLSKRALHYRRKRLALKRPPPDSHDSPN 128
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 293 QIAEPSPRHTRGEPENSKRHNNYSSHLRSSSD 388
+IA+PSP+H R N ++ S+ + SD
Sbjct: 106 EIAKPSPKHKRVSKANGSKNGAKSAVKKEESD 137
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 263 DSKTTRCARTQIAEPSPRHTRGEPENSKRHNNYSSHLRSSSDNPSLNQS 409
++ + R T PS RH R P HN S +S D + ++S
Sbjct: 549 ETSSLRRKNTLTRRPSIRHARSSPYIDTGHNEASKFSHTSFDPKASSKS 597
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 305 PSPRHTRGEPENSKRHNNYSSHLRSSSDNPSLNQSG*EIC 424
P PRH + E + S H YSS SS D S + + C
Sbjct: 50 PPPRHHK-EHKKSHHHWEYSSDDDSSDDEESCEKKKPKCC 88
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 133 CTRI-RYTHTSIAALRHATHHRVQ*FK 210
CTR+ TH ++ +L + HH +Q F+
Sbjct: 428 CTRVFELTHPNVGSLEESIHHPLQYFQ 454
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 147 IHAYVDCSLASRYAPSSAVVQRPLIKISTRTSLY 248
++ V C LA +Y P A +P +IS R ++Y
Sbjct: 93 VNGKVLCQLAFKYYPKLASNWKPRYQISERNTVY 126
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +2
Query: 200 SSSKTPY*NLDEN*SLPLQ*NDSKTTRCARTQIAEPSPRHTRGEPENSKRHNNYSSHLRS 379
SSS TP + + S P + SK++ +++ + S + +S + ++ SS
Sbjct: 149 SSSSTPSSSSSSSSSSPSS-SSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207
Query: 380 SSDNPSLNQS 409
SS +PS ++S
Sbjct: 208 SSASPSSSKS 217
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 272 TTRCARTQIAEPSPRHTRGEPENSKRHNNYSSHLRSSSDNPSLNQ 406
T +++ I+ P P T G+P HN S+ S+ + N+
Sbjct: 372 TNGTSQSNISTPLPEPTPGQPRKVSGHNPPSARRLPSASSVKFNE 416
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 375 GQAAITRHL---ISPDKKFVLLVHQTGIGLDTLGLTV 476
GQAA+ + I P +K + +V +TG G T+GLT+
Sbjct: 1192 GQAAVLEDINLEILPKEK-IAIVGRTGSGKSTMGLTL 1227
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 402 ISPDKKFVLLVHQTGIGLDTLGLTV 476
I+P +K V +V +TG G TLGLT+
Sbjct: 1236 INPSEK-VAVVGRTGSGKSTLGLTL 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,812
Number of Sequences: 5004
Number of extensions: 49209
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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