Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12k05
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0442 + 17957358-17958075,17958156-17958242,17958547-179586... 33 0.18
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 31 0.54
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 29 2.2
02_05_1049 - 33752410-33752478,33753242-33753376,33753622-337539... 29 2.2
05_02_0098 - 6578791-6578873,6579113-6579284 29 3.8
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 28 5.1
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 28 6.7
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 28 6.7
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 27 8.9
>10_08_0442 +
17957358-17958075,17958156-17958242,17958547-17958647,
17958766-17958834,17958989-17959156
Length = 380
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 260 NDSKTTRCART-QIAEPSPRHTRGEPENSKRHNNYSS-HLRSSSDN 391
NDS R R + S RH+ G P +S+RH++Y H + DN
Sbjct: 36 NDSSNARSGRGHEYVRHSDRHSSGAPRDSRRHDDYRRYHDKRGDDN 81
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 602 CYNNRHVLLLSSARRGAVSVTGCFHSIRSSALS 504
CYN LL RRGA +VT H++ S L+
Sbjct: 365 CYNGCAAFLLDRVRRGAAAVTLATHNVESGQLA 397
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Frame = +3
Query: 384 AITRHLIS----PDKKFVLLVHQTGIGLDTLGLTV 476
A+ HL+S P ++F+ ++ +TGIG TL LT+
Sbjct: 100 ALENHLLSHEHTPQQRFISILGETGIGKSTLMLTI 134
>02_05_1049 -
33752410-33752478,33753242-33753376,33753622-33753971,
33755304-33755370
Length = 206
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 263 DSKTTRCARTQIAEPSPRHTRGEPENSKRHNNYSSHLRSSS 385
DS+ + Q+A+ + T E ENS H ++++ SSS
Sbjct: 153 DSRVLELLQKQLADERKKRTEIEKENSMLHEQVAAYMHSSS 193
>05_02_0098 - 6578791-6578873,6579113-6579284
Length = 84
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 17 IDVNARGSVVLCSGARSAFREYSSLKTNSNIEIQGSITSARGFDTRIRRLQP 172
+D ++VL GA+ RE S+LK I GS+ S F IR + P
Sbjct: 32 LDAMDFSTMVLDLGAKQGSREDSNLKRPPPISSSGSVHSEGRFGQSIRHVGP 83
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 320 TRGEPENSKRHNNYSSHLRSSSDNPSLNQSG*EICTFSTSNW--YWPGHLRTNGKSKQ-* 490
T G + K H N+ R+ + PS NQS E C + +W Y G +R +G +++
Sbjct: 367 TYGRNSDRKWHGNHLDGHRAKRNMPSENQSK-ESCYPNMKDWQSYSHGDVRQSGDNQEGN 425
Query: 491 TRPIEK 508
T+ I+K
Sbjct: 426 TKKIKK 431
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 77 EYSSLKTNSNIEIQGSITS-ARGFDTRIRRLQPCVT 181
EY K SNI IQ ITS R F+T++ Q C++
Sbjct: 8 EYELQKEVSNIMIQSYITSMRREFETKLWENQNCIS 43
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 201 VVQRPLIKISTRTSLYRYNKTTQRRPDAPEHRSPNPLRVTQGGNP 335
++ P IKI R +Y N+ + DAP + + Q G+P
Sbjct: 242 ILTHPNIKIPNRGKIYSVNEGNAKNWDAPTAKFVEKCKFPQDGSP 286
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 332 VPPLCDAERVRRSVFGRIWSSLSRFIVAVKTSSRR 228
V P+C+ R +V G+I + ++RF++ T R+
Sbjct: 85 VGPVCEPWNARATVQGKINTEMNRFVIHTVTRPRK 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,664
Number of Sequences: 37544
Number of extensions: 329705
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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