Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k05
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.77 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.4  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 611 NSRCYNNRHVLLLSSARRGAVSVTGCFHSIRSSALSLWVLFIVLIYR 471
           N+ CY  R+     +A R  +S+  CF  + +   ++W +  V  Y+
Sbjct: 536 NTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYK 582


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 246 YRYNKTTQRRPDAPEHRSPNP 308
           +RYN   Q +P  PEH+ P P
Sbjct: 56  HRYN--FQLKPYNPEHKPPGP 74


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 246 YRYNKTTQRRPDAPEHRSPNP 308
           +RYN   Q +P  PEH+ P P
Sbjct: 57  HRYN--FQLKPYNPEHKPPGP 75


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 329 EPENSKRHNNYSSHLRSSSDNPSLNQSG*EICTFSTSN 442
           +  N   HN+  +   S SDN + NQ   +    S SN
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSN 457


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 3/18 (16%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 GQLQVHEDSIHAYVDCSL 173
           G++ + ++++  Y++C++
Sbjct: 50  GKINIEDENVQLYIECAM 67


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 590 RHVLLLSSARRGAVSVTGCFHSIR 519
           R  LLLS A    VSV G  HS R
Sbjct: 10  RSFLLLSIASTYVVSVAGYKHSRR 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,141
Number of Sequences: 438
Number of extensions: 4037
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)