Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12k01
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.9  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.9  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   5.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   8.8  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 418 RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV--DLLRASATQSKQRQEYGNHEPDASV 248
           RK +NV     LG SDT QS+   S      V  + LRAS TQS         E DASV
Sbjct: 285 RKLFNVFL---LGDSDTIQSVAQASLTQAVTVVYERLRASHTQSNSTSAL--PEEDASV 338


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 324
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -1

Query: 379 HSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGAL 200
           HS+ + S G+R R S S+ D   + +   +  +   +  P     +   S  G+ + GA+
Sbjct: 94  HSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGAI 153

Query: 199 NVSRV 185
           +V+ +
Sbjct: 154 DVANL 158


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/80 (22%), Positives = 40/80 (50%)
 Frame = -1

Query: 544 ASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTT 365
           A++  S++Q S  + A+P     + + + +A R ++  Q       NV+++  +  +   
Sbjct: 2   ATRSVSMKQTS-QRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVR 60

Query: 364 QSLGARSRRSTSNVDLLRAS 305
             + A++  S+SNV  L +S
Sbjct: 61  GGVAAKATDSSSNVTSLASS 80


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 586 PARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNT 461
           P RRS  N    L    +  LR+FS+ + A  A  + S  N+
Sbjct: 140 PRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNS 181


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 544 ASKRSSLRQFSVPKRATPAGR 482
           +S  S  R+  +P+RATPA R
Sbjct: 541 SSNSSGTRRLGLPQRATPASR 561


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 586 PARRSPINKKQLLAASKRSSLRQFSVPKRATPA 488
           PA   P N K+ +  +  S  ++ + PK+ATPA
Sbjct: 52  PAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,097
Number of Sequences: 5004
Number of extensions: 48090
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)