Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j23
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    29   0.75 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.0  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   9.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.3  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/77 (19%), Positives = 33/77 (42%)
 Frame = +1

Query: 406 ETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELKQRIDRDRNKTTYRVDYCETGPGA 585
           +TP S YD P++  +  +   P  Y +  N ++         D N    +++  ++   +
Sbjct: 46  KTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSS 105

Query: 586 KFEGLQRAADDSGSGPL 636
           K +  + A ++S    L
Sbjct: 106 KLQSCKSACENSSQSLL 122


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 484 CCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 371
           CCT L +S + +   HW    +   F+   R  R+T L
Sbjct: 328 CCTLLCLSPKQFFLKHWISSLDAAFFRVKDRRLRNTGL 365


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 422  RDVGVSGLAATRTGYSFGSRRGPIISFRLQPPSFPGGSC 306
            R  G   +   +TGY+   + G + S  +Q  S P G C
Sbjct: 1744 RPEGYPYVILNQTGYNLSIQYGNLNSSEMQSLSLPSGKC 1782


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 322 KEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAF 444
           KEG W  +E++  LLD K+   +V +  E   S  D P A+
Sbjct: 221 KEGAWRTSELILYLLDTKM---KVISDKEGYESLKDLPPAY 258


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 14  SYISTLWILFCNP 52
           S IS LWILFC P
Sbjct: 214 SAISALWILFCLP 226


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 337 SRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELK 516
           SR +++G LL PK++      S +      + PN+ L +L      L   + NEA   L+
Sbjct: 584 SRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERV-NEAIGVLQ 642

Query: 517 QRIDRD 534
           + +D++
Sbjct: 643 EFVDQE 648


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 351 NGSSPRSKTVSRASRCES*NSNISLRSAQCIFR*ASIEIPNAVQHP 488
           NG S RS   S    C+S +S  S+       R +S+   N+VQ P
Sbjct: 247 NGPSFRSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQP 292


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 RPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPK--LYPVRVAASPETPTSR 423
           R  D R P+ +  + PQLPP      S    + P +DP+  LY   +  +   P ++
Sbjct: 357 RSTDEREPERTSEDPPQLPPSPSSPSSPALSVKPNIDPQPPLYNSTLTTTRSIPANK 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,591
Number of Sequences: 5004
Number of extensions: 64682
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)